Commits · dbcbad4fadb58d3a35b38a65d85364fc426f134b · ensembl-gh-mirror / ensembl

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Feb 26, 2018
- minor documentation update · dbcbad4f
  Tiago Grego authored 7 years ago
  
  dbcbad4f
- Added biotype.t test to check warning in fetch_all_by_object_type · 2645315f
  Tiago Grego authored 7 years ago
  
  2645315f
- Merge branch 'master' into feature/biotype · 795b13b0
  Tiago Grego authored 7 years ago
  
  795b13b0
Feb 23, 2018
- updated Biotype.pm, percritic -3 OK · dc9cd2ab
  Tiago Grego authored 7 years ago
  
  dc9cd2ab
Feb 22, 2018
- regex fix in housekeeping_apache2.t · eed00353
  Tiago Grego authored 7 years ago
  
  eed00353
Feb 21, 2018
- missed a rogue warning... · 76f6686b
  Tiago Grego authored 7 years ago
  
  76f6686b
- updated biotype related warnings · 1f250f35
  Tiago Grego authored 7 years ago
  
  1f250f35
- updated comments · e65b5f03
  Tiago Grego authored 7 years ago
  
  e65b5f03
- updated documentation · f564e4b8
  Tiago Grego authored 7 years ago
  
  f564e4b8
- updated biotype to always return object and updated tests · 584d7ed0
  Tiago Grego authored 7 years ago
  
  584d7ed0
- removed status documentation · 59e34f9f
  Tiago Grego authored 7 years ago
  
  59e34f9f
Feb 20, 2018
- Merge branch 'master' into feature/biotype · 13d04c8b
  Tiago Grego authored 7 years ago
  
  13d04c8b
Feb 19, 2018
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 4d786171
  Magali Ruffier authored 7 years ago
  
  4d786171
- removed newline at EOF so SQLite does not complain · 38cc9c36
  Tiago Grego authored 7 years ago
  
  38cc9c36
Feb 16, 2018
- patched test databases with patch_92_93_b.sql · f6c8e55a
  Tiago Grego authored 7 years ago
  
  f6c8e55a
- updated patch_92_93_b.sql and added changes to tables.sql · de8e5bd4
  Tiago Grego authored 7 years ago
  
  de8e5bd4
- Merge branch 'master' into feature/biotype · 61ee97a0
  Tiago Grego authored 7 years ago
  
  61ee97a0
- Merge branch 'schema_version_update' into feature/biotype · 11fa2cd4
  Tiago Grego authored 7 years ago
  
  11fa2cd4
Feb 14, 2018
- updated comments · e6542d59
  Tiago Grego authored 7 years ago
  
  e6542d59
- Added tests for biotype · fc8942be
  Tiago Grego authored 7 years ago
  
  fc8942be
- refactored default 'protein_coding' biotype in gene and transcript · ccfa2762
  Tiago Grego authored 7 years ago
  
  ccfa2762
- identation to improve readability · caade78c
  Tiago Grego authored 7 years ago
  
  caade78c
- reverted biotype_id attribute to biotype in gene and transcript · 637106e7
  Tiago Grego authored 7 years ago
  
  637106e7
- [ENSCORESW-2325 ]. Take note of the fix. · efbd031b
  Alessandro Vullo authored 7 years ago
  
  efbd031b
- [ENSCORESW-2325]. Temporary fix to take into account unavailability of next... · edf58537
  Alessandro Vullo authored 7 years ago
```
[ENSCORESW-2325]. Temporary fix to take into account unavailability of next release DBs on the live server when adding the version upgrade to the following one. Also, switch to the default port.
```
  edf58537
Feb 13, 2018
- activated fallback on overload · 43bceae8
  Tiago Grego authored 7 years ago
  
  43bceae8
- schema_version updated to 93 · 0e226fe9
  Tiago Grego authored 7 years ago
  
  0e226fe9
Feb 12, 2018
- [ENSCORESW-2612]. Send notification only when build status changes, on_success... · 9e54886e
  Alessandro Vullo authored 7 years ago
```
[ENSCORESW-2612]. Send notification only when build status changes, on_success defaults to 'change' accoring to documentation.
```
  9e54886e
Feb 09, 2018
- replaced use base with use parent · d50676aa
  Tiago Grego authored 7 years ago
  
  d50676aa
Feb 08, 2018
- added new_fast() to Biotype and used it from BiotypeAdaptor · 590b8402
  Tiago Grego authored 7 years ago
  
  590b8402
- comments updated. Exception added to Biotype::object_type() · 8edd9fec
  Tiago Grego authored 7 years ago
  
  8edd9fec
- updated biotype functionality to mimic legacy behaviour of setting through... · 8de35115
  Tiago Grego authored 7 years ago
```
updated biotype functionality to mimic legacy behaviour of setting through biotype() and defaulting to 'protein_coding'
```
  8de35115
- biotype functions in Gene and Transcript replaced to use new Biotype object · 3d319c74
  Tiago Grego authored 7 years ago
  
  3d319c74
- custom download for HGNC · 74c61732
  Magali Ruffier authored 7 years ago
  
  74c61732
- allow https as well as http · e2d103f6
  Magali Ruffier authored 7 years ago
  
  e2d103f6
Feb 07, 2018
- Added preliminary BiotypeAdaptor and Biotype object, with accessor methods in Gene and Trancript · 92c00b57
  Tiago Grego authored 7 years ago
  
  92c00b57
- consistent description retrieval · 9738d2e3
  Magali Ruffier authored 7 years ago
  
  9738d2e3
- standardise display xref assignment · b0aa1436
  Magali Ruffier authored 7 years ago
  
  b0aa1436
Feb 05, 2018
- Added biotype table · 8fcca4bc
  Tiago Grego authored 7 years ago
  
  8fcca4bc
Feb 01, 2018
- clean up Xenbase description · 2a2ffed7
  Magali Ruffier authored 7 years ago
  
  2a2ffed7