Commits · dc9727253bb9f5b7e70b8ee5341bd4b8ba3a5678 · ensembl-gh-mirror / ensembl

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Mar 17, 2003
- *** empty log message *** · dc972725
  Emmanuel Mongin authored 22 years ago
  
  dc972725
- change to SQL in _type_by_external_id to add xref · 6cb5a257
  Brian Gibbins authored 22 years ago
  
  6cb5a257
- fix undef synonym error · 9fcef4be
  Brian Gibbins authored 22 years ago
  
  9fcef4be
- fix hash key values for db_links · c93eb96e
  Brian Gibbins authored 22 years ago
  
  c93eb96e
- chnaged new_fast · 4810c081
  Brian Gibbins authored 22 years ago
  
  4810c081
Mar 15, 2003
- small fixes · 86a23953
  Shawn Hoon authored 22 years ago
  
  86a23953
- proper use of rearrange, deref contig if arra ref · 026bf6c0
  Shawn Hoon authored 22 years ago
  
  026bf6c0
Mar 14, 2003
- avoid warning · 721fa1c3
  Simon Potter authored 22 years ago
  
  721fa1c3
- · ca018736
  Laura Clarke authored 22 years ago
```
changed some if defined to ifs given 0's and null string shouldn't be evaluated as true in those
contexts
```
  ca018736
- added qtl tables · 5457e0c1
  Graham McVicker authored 22 years ago
  
  5457e0c1
- fixed a bit of Vega and ESTGene dumping logic · ba1a3932
  Graham McVicker authored 22 years ago
  
  ba1a3932
- added line to avoid a warning · 98a18ba6
  Simon Potter authored 22 years ago
  
  98a18ba6
- added new probe name to external_db enum · c6dedc5c
  Damian Keefe authored 22 years ago
  
  c6dedc5c
- converting from Bio::Pipeline::Analysis to EnsEMBL Analysis · e98acad6
  juguang authored 22 years ago
  
  e98acad6
Mar 13, 2003
- updated some pods · 044dbe48
  Graham McVicker authored 22 years ago
  
  044dbe48
- *** empty log message *** · 135b14ea
  Emmanuel Mongin authored 22 years ago
  
  135b14ea
- added remove() and update() · ba34bb76
  Simon Potter authored 22 years ago
  
  ba34bb76
- added support for optional dumping of estgene/vega genes · fb740ac7
  Graham McVicker authored 22 years ago
  
  fb740ac7
- Qtl and QtlFeature Adaptor get functions added · 90df228e
  Arne Stabenau authored 22 years ago
  
  90df228e
- flush exons didnt flush the cdna_coding_start/end cache · b658446a
  Arne Stabenau authored 22 years ago
  
  b658446a
- converter from GenericHSP to BaseAlignFeature's submodules, for blast report · 048b9f36
  juguang authored 22 years ago
```
GenericHPS::algorithm tells what program of blastall is used, and in response of this, the code try to find the specific alignment feature in EnsEMBL.
```
  048b9f36
Mar 12, 2003
- Slice can retrieve qtl features · 1ec434ad
  Arne Stabenau authored 22 years ago
  
  1ec434ad
- API for qtls · 4bf96eea
  Arne Stabenau authored 22 years ago
  
  4bf96eea
- New test and test data for qtls · f0c176db
  Arne Stabenau authored 22 years ago
  
  f0c176db
- fix broken method fetch_by_translation_id · 469fc39d
  Graham McVicker authored 22 years ago
  
  469fc39d
- *** empty log message *** · 4a2fa827
  Emmanuel Mongin authored 22 years ago
  
  4a2fa827
Mar 11, 2003
- *** empty log message *** · 10601a94
  Emmanuel Mongin authored 22 years ago
  
  10601a94
Mar 10, 2003
- removed crufty methods to_FTHelper, intron_start, intron_position · 6bb51407
  Graham McVicker authored 22 years ago
  
  6bb51407
- Fixed so that protein hits without corresponding InterPro hits still come out · 0786f0a9
  Web Admin authored 22 years ago
  
  0786f0a9
Mar 07, 2003
- force chromosome names to be cast as strings so mysql doesn't screw up · fb86bb41
  Graham McVicker authored 22 years ago
```
removed unnecessary evals
```
  fb86bb41
- removed use of Intron module · e993c76e
  Graham McVicker authored 22 years ago
  
  e993c76e
- removed never used, and currently broken Intron module · 2561ae12
  Graham McVicker authored 22 years ago
  
  2561ae12
Mar 06, 2003
- tweaks to make dnadb work better · 8637a77c
  Graham McVicker authored 22 years ago
  
  8637a77c
- *** empty log message *** · 936d9e78
  Tanya Gray authored 22 years ago
  
  936d9e78
- get_binvalues modified - set default value for biggest_value and smallest_value · 82e7110d
  Tanya Gray authored 22 years ago
  
  82e7110d
- Converter system. Converting objects between EnsEMBL and other projects, mainly Bioperl. · 374b7a21
  juguang authored 22 years ago
  
  374b7a21
Mar 05, 2003
- coding_start/end => coding_region_start/end · e6f80908
  Graham McVicker authored 22 years ago
  
  e6f80908
- added coding_start/end disclaimer · 37fc092f
  Graham McVicker authored 22 years ago
  
  37fc092f
- · eea79a8d
  Laura Clarke authored 22 years ago
```
added a little more info to the no default assembly error message
```
  eea79a8d
- · d6e1d9bc
  Laura Clarke authored 22 years ago
```
changed display_label method
```
  d6e1d9bc