Commits · dca80434a7495b038eaaea17a5602aed7b7d8afb · ensembl-gh-mirror / ensembl

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Jun 23, 2009
- Formatting · cd531630
  Andreas Kusalananda Kähäri authored 15 years ago
  
  cd531630
Apr 20, 2009
- merge from vega-49-dev · baa53639
  Steve Trevanion authored 15 years ago
  
  baa53639
- merge from 49-dev · 8f5a9b67
  Steve Trevanion authored 15 years ago
  
  8f5a9b67
Apr 08, 2009
- whitespace · f09df535
  Steve Trevanion authored 15 years ago
  
  f09df535
Mar 17, 2009
- Added hooks for ontology adaptors. · bf83037a
  Andreas Kusalananda Kähäri authored 16 years ago
  
  bf83037a
- Readable. · 7ac8de25
  Andreas Kusalananda Kähäri authored 16 years ago
  
  7ac8de25
Mar 04, 2009
- Remove initial blanks from NAME section lines. · 359c3ec4
  Andreas Kusalananda Kähäri authored 16 years ago
  
  359c3ec4
- Streamline LICENSE, CONTACT, and AUTHOR sections in POD. · 188692f6
  Andreas Kusalananda Kähäri authored 16 years ago
```
Formatting of SYNOPSIS code.

Passes unit tests.
```
  188692f6
Feb 25, 2009
- split speed up using unpack · 7723b1d6
  Albert Vilella authored 16 years ago
  
  7723b1d6
Nov 03, 2008
- remove calculation for regulatory_region here and calculate all in parallel_transcript_variation.pl · 27e794f2
  Yuan Chen authored 16 years ago
  
  27e794f2
Oct 13, 2008
- fixed errors · 034ccb06
  Beth Yates authored 16 years ago
  
  034ccb06
Oct 10, 2008
- update to add consequence_type of within_mature_miRNA · 9affb7d3
  Yuan Chen authored 16 years ago
  
  9affb7d3
Jul 28, 2008
- added condition to check for regulatory features only if there is a FuncGen database · 47ed19f2
  Daniel Rios authored 16 years ago
  
  47ed19f2
Jul 17, 2008
- changed to fetch regulatory feature from FuncG database as well · 5b8bd2bd
  Yuan Chen authored 16 years ago
  
  5b8bd2bd
Jun 06, 2008
- Formatting · 2cc463d5
  Andreas Kusalananda Kähäri authored 16 years ago
  
  2cc463d5
Apr 28, 2008
- support for multiline configurations (delimited with trailing backslash) · e28ad271
  Patrick Meidl authored 16 years ago
  
  e28ad271
Apr 23, 2008
- renamed dynamic_use() to inject() · 1a090ead
  Patrick Meidl authored 16 years ago
  
  1a090ead
- minor fix · 9ce5fb2c
  Patrick Meidl authored 16 years ago
  
  9ce5fb2c
Apr 04, 2008
- added default value support to user_proceed() · 4c291ef6
  Patrick Meidl authored 17 years ago
  
  4c291ef6
Mar 26, 2008
- merge from vega-48-dev · f7ccac98
  Steve Trevanion authored 17 years ago
  
  f7ccac98
- merge from branch-vega-49 · b4cb20ed
  Steve Trevanion authored 17 years ago
  
  b4cb20ed
- *** empty log message *** · 854b2361
  Steve Trevanion authored 17 years ago
  
  854b2361
Mar 13, 2008
- More useful messages in a couple of the throws()'s. · 576b0c66
  Andreas Kusalananda Kähäri authored 17 years ago
  
  576b0c66
- Remove dependency on Bio::EnsEMBL::Root. · da2ebf35
  Andreas Kusalananda Kähäri authored 17 years ago
```
Beautify.
```
  da2ebf35
Feb 19, 2008
- merge from vega-46-dev · 50b40137
  Steve Trevanion authored 17 years ago
  
  50b40137
Jan 29, 2008
- modified to use funcgen database to calculate snps in regulatory regions · 52b6acec
  Daniel Rios authored 17 years ago
  
  52b6acec
Dec 20, 2007
- Added an eprof_reset method that clears $global · 218e542a
  Will Spooner authored 17 years ago
  
  218e542a
Nov 22, 2007
- Use long name for all, not just the segemented ones · 95a5930e
  Ian Longden authored 17 years ago
  
  95a5930e
Oct 04, 2007
- added last_status() · 1f7e3f27
  Patrick Meidl authored 17 years ago
  
  1f7e3f27
- added support for retrieving features and slices to be projected from a... · 75c83af4
  Patrick Meidl authored 17 years ago
```
added support for retrieving features and slices to be projected from a different database; documentation
```
  75c83af4
Sep 28, 2007
- convenience utility to help with projecting Features and Slices between assemblies · f4423882
  Patrick Meidl authored 17 years ago
  
  f4423882
Sep 14, 2007
- added functionality to automatically create logfile names; simplyfied progress/progressbar logging · 6a759a5d
  Patrick Meidl authored 17 years ago
  
  6a759a5d
- added --logauto, correctly deal with quotes in parameter values · dc589cfb
  Patrick Meidl authored 17 years ago
  
  dc589cfb
- better accurracy in parse_bytes() · 4d02c865
  Patrick Meidl authored 17 years ago
  
  4d02c865
Sep 07, 2007
- merge from vega-44-dev · 9f0cd750
  Web Admin authored 17 years ago
  
  9f0cd750
Aug 27, 2007
- added path_append() · 161d3d17
  Patrick Meidl authored 17 years ago
  
  161d3d17
- fixed typo · bff575df
  Patrick Meidl authored 17 years ago
  
  bff575df
- added is_true() · 0d845626
  Patrick Meidl authored 17 years ago
  
  0d845626
Jul 12, 2007
- minor fixes for loglevel · 53b587e6
  Patrick Meidl authored 17 years ago
  
  53b587e6
Jun 29, 2007
- introduced loglevels · 7511fdd8
  Patrick Meidl authored 17 years ago
  
  7511fdd8