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Include meta data for patches patch_55_56_[a-d].sql

#
# Title: Add an index to the splicing_event_feature table
#
# Description:
# With an index on transcript_id in splicing_event_feature, the
# generation of biomarts will be sped up.

table.sql updated too.

get_all_Exons( '-constitutive' => 1 ).

db_display_name to "GOSlim GOA".

as well as about how to build the latter.

The script adds one table by subset previously added to the database and
maps all terms to the closest term within that subset.  The tables are
named "aux_XX_YY_map" where "XX" is the ontology ("GO" or "SO"), and
"YY" is the subset name (e.g., "goslim_goa").

The schema for each of the subset map tables is simply as follows:

  +----------------+------------------+------+-----+---------+-------+
  | Field          | Type             | Null | Key | Default | Extra |
  +----------------+------------------+------+-----+---------+-------+
  | term_id        | int(10) unsigned | NO   | PRI | NULL    |       |
  | subset_term_id | int(10) unsigned | NO   | PRI | NULL    |       |
  +----------------+------------------+------+-----+---------+-------+

... where both fields refers into the 'term' table.

http://www.ebi.ac.uk/GOA/rat_release.html.

(2) Updated URL for downloading GO file. URL is now
http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz.
("lastest-termdb" has been changed to "latest-termdb")