"Bio::EnsEMBL::Util::Eprof".  Change in comments.

No functional change.

Fixed comment.

genomic_end() on translations.

Current API and test DB passes the tests.

    $translation->cdna_start();    # or...
    $translation->cdna_start($transcript);
        # Returns the start position of the translation in cDNA
        # coordinates.  Providing the transcript explicitly speeds
        # things up a bit.  The transcript is used in a call to
        # $exon->cdna_coding_start($transcript);

    $translation->cdna_end();    # or...
    $translation->cdna_end($transcript);
        # Returns the end position of the translation in cDNA
        # coordinates.  Providing the transcript explicitly speeds
        # things up a bit.  The transcript is used in a call to
        # $exon->cdna_coding_end($transcript);


    $translation->genomic_start();
        # Returns the start position of the translation in genomic
        # coordinates on the forward strand.

    $translation->genomic_end();
        # Returns the end position of the translation in genomic
        # coordinates on the forward strand.

cdna_coding_end(), coding_region_start(), and coding_region_end() on
exons.

Current API and test DB passes the tests.

    $exon->cdna_start($transcript);
        # Returns the start position of the exon in cDNA coordinates.

    $exon->cdna_end($transcript);
        # Returns the end position of the exon in cDNA coordinates.


    $exon->cdna_coding_start($transcript);
        # Returns the start position of the coding region of the exon
        # in cDNA coordinates.  Returns undef if the whole exon is
        # non-coding.

    $exon->cdna_coding_end($transcript);
        # Returns the end position of the coding region of the exon
        # in cDNA coordinates.  Returns undef if the whole exon is
        # non-coding.


    $exon->coding_region_start($transcript);
        # Returns the start position of the coding region of the exon in
        # genomic coordinates on the forward strand.  Returns undef if
        # the whole exon is non-coding.

    $exon->coding_region_end($transcript);
        # Returns the end position of the coding region of the exon in
        # genomic coordinates on the forward strand.  Returns undef if
        # the whole exon is non-coding.


Since an exon may be part of one or more transcripts, the relevant
transcript must be given as argument ot these methods.

score is no longer an attribute of ArchiveStableId (this is now handled by StableIdEvent); history tree consolitation and untangling calls

Corrected documentation for created_date() and modified_date() - they actually use a UNIX time integer value, not a MySQL date.

message_only_once

present, and reuse it if it is.

fails, the feature is reconstructed from transforms of the unagpped
components of the feature
- Added some checks to Transcript/Exon transform that warns and skips
supporting features that do not transform successfully