Commits · ea945dc6462cdc0fcec214404112491aab009d7a · ensembl-gh-mirror / ensembl

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Dec 10, 2014
- [ENSCORESW-1117 ]. Get the list of genome components for a polyploid genome. · ea945dc6
  Alessandro Vullo authored 10 years ago
  
  ea945dc6
- [ENSCORESW-1117 ]. Test getting the list of genome components. · ce272c1e
  Alessandro Vullo authored 10 years ago
  
  ce272c1e
- [ENSCORESW-1117 ]. Test method in GenomeContainer to check genome polyploidy. · 6b3ea911
  Alessandro Vullo authored 10 years ago
  
  6b3ea911
- [ENSCORESW-1117 ]. Support loading core database to test polyploid genome support. · 248747af
  Alessandro Vullo authored 10 years ago
  
  248747af
- [ENSCORESW-1117 ]. Polyploidy test database extracted from Triticum aestivum (EG25). · 14711701
  Alessandro Vullo authored 10 years ago
  
  14711701
Dec 09, 2014
- [ENSCORESW-1117]. meta_key could be not defined. Polyploidy is defined with... · e683f1bd
  Alessandro Vullo authored 10 years ago
```
[ENSCORESW-1117]. meta_key could be not defined. Polyploidy is defined with more than two sets of paired chromosomes.
```
  e683f1bd
- Method to check whether a genome is polyploid or not. · 15b2f05f
  Alessandro Vullo authored 10 years ago
  
  15b2f05f
- [ENSCORESW-1117 ]. 'ploidy' is species-specific meta key. · 939906fe
  Alessandro Vullo authored 10 years ago
  
  939906fe
- utilsIo.t merged with io.t · 5090e673
  Alessandro Vullo authored 10 years ago
  
  5090e673
- ENSCORESW-1129: BEDSerializer added into Utils/IO directory · abb70f35
  Magali Ruffier authored 10 years ago
```
was used in REST View
```
  abb70f35
- added missing patches · 46626ab8
  Magali Ruffier authored 10 years ago
  
  46626ab8
Dec 08, 2014
- Merge pull request #47 from Anacode/mg13/ts_add_sf_fix_2 · f69010ab
  Magali Ruffier authored 10 years ago
```
Transcript->add_supporting_features(): fix cut-n-pasted throw() message.
```
  f69010ab
- Transcript->add_supporting_features(): fix cut-n-pasted throw() message. · c0e26c73
  Michael Gray authored 10 years ago
  
  c0e26c73
Dec 05, 2014
- ENSCORESW-1142 : add source RefSeq_ncRNA for NR_ transcripts · a854ce95
  Magali Ruffier authored 10 years ago
  
  a854ce95
- ENSCORESW-1130 : remove compara dbs from lookup · 79a9cbf5
  Magali Ruffier authored 10 years ago
  
  79a9cbf5
- ENSCORESW-1106 : retire overlapping_regions script · e7d262e5
  Magali Ruffier authored 10 years ago
  
  e7d262e5
- remove any accidental spaces at the end of sources rather than dying horribly · 1abdfaaa
  Magali Ruffier authored 10 years ago
  
  1abdfaaa
- remove evil blank spaces · 36563be7
  Magali Ruffier authored 10 years ago
  
  36563be7
- added config for amazon molly and sperm whale · 787e9c11
  Magali Ruffier authored 10 years ago
```
also added missing RefSeq_ncRNA source for otherfeatures import
```
  787e9c11
- if type is null, should be explicit \N in text file · 4c1416e9
  Magali Ruffier authored 10 years ago
  
  4c1416e9
- update master schema to release 79 · cfe26ad2
  Magali Ruffier authored 10 years ago
  
  cfe26ad2
- wrong taxonomy id for tasmanian devil · 3ad784b1
  Magali Ruffier authored 10 years ago
  
  3ad784b1
- Ontology test database patched. · 51dd37ae
  Alessandro Vullo authored 10 years ago
  
  51dd37ae
- Though it wasn't case sensitive. · 33aaf50a
  Alessandro Vullo authored 10 years ago
  
  33aaf50a
Dec 04, 2014
- Type added to the synonym table. · 352182a9
  Alessandro Vullo authored 10 years ago
  
  352182a9
- Patches for 79: schema version and synonym type. · c136c0b9
  Alessandro Vullo authored 10 years ago
  
  c136c0b9
Dec 03, 2014
- added xref config for tasmanian devil with up-to-date list of sources · a4c5a080
  Magali Ruffier authored 10 years ago
  
  a4c5a080
- ENSCORESW-1119 : refseq_import source added for vervet monkey and flycatcher · 6df52229
  Magali Ruffier authored 10 years ago
  
  6df52229
- Merge pull request #45 from rishidev/master · e9e810c7
  Alessandro Vullo authored 10 years ago
```
Vervet-AGM added to xrefs config
```
  e9e810c7
- Vervet-AGM added to xrefs config · 3b24e51d
  rishidev authored 10 years ago
  
  3b24e51d
- Skip the correct amount of tests. · baf55198
  Alessandro Vullo authored 10 years ago
  
  baf55198
- Zip based array slurping and corresponding tests. · ac70524a
  Alessandro Vullo authored 10 years ago
  
  ac70524a
- bzip2 based array slurping and corresponding tests. · 1c20e6a2
  Alessandro Vullo authored 10 years ago
  
  1c20e6a2
Dec 02, 2014
- Some zip related tests. · 9ea373a2
  Alessandro Vullo authored 10 years ago
  
  9ea373a2
- Implements reading a zip file content into memory. · 62e6ea58
  Alessandro Vullo authored 10 years ago
  
  62e6ea58
- Some bzip2 related tests. · 7423b3ca
  Alessandro Vullo authored 10 years ago
  
  7423b3ca
- Implements loading of bzip2 file content into memory. · bbb0258c
  Alessandro Vullo authored 10 years ago
  
  bbb0258c
- Work with zip files. · bb5fb867
  Alessandro Vullo authored 10 years ago
  
  bb5fb867
- Work with bz2 files. · aea17f43
  Alessandro Vullo authored 10 years ago
  
  aea17f43
- Necessary header to proceed with the implementation of Bzip/Zip routines. · 7592f8cb
  Alessandro Vullo authored 10 years ago
  
  7592f8cb