Commits · ebaff21a3e1ae39908f5d6376c8c0f3a04d00c48 · ensembl-gh-mirror / ensembl

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May 13, 2011
- use api_version to get the name of the vega and core databases to be used · ebaff21a
  Ian Longden authored 13 years ago
  
  ebaff21a
May 12, 2011
- Updated calculation of xref increase/decrease percentage · dff6968d
  Monika Komorowska authored 13 years ago
  
  dff6968d
- moved Slice iterator stuff to BaseFeatureADaptor · 24be8012
  Nathan Johnson authored 13 years ago
  
  24be8012
- Added slice iterator mode to new method · 60cda8aa
  Nathan Johnson authored 13 years ago
  
  60cda8aa
- Remove extra ttype keyword at the end · 0085e26f
  Ian Longden authored 13 years ago
  
  0085e26f
May 11, 2011
- Switched to using iterators for working with results sets. This allows a user... · 8d7646a7
  Andy Yates authored 13 years ago
```
Switched to using iterators for working with results sets. This allows a user to request an iterator if they were wanting to process a very large dataset
```
  8d7646a7
- Bringing in each() as a method on Iterator · 1d5bc34e
  Andy Yates authored 13 years ago
  
  1d5bc34e
- LRG transcripts. Removal of display_xref_ids, as these are not wanted · 1c382bb2
  Ian Longden authored 13 years ago
  
  1c382bb2
- Corrected error message. · 763ad269
  Monika Komorowska authored 13 years ago
  
  763ad269
- if a patch fails do not continue applying later patches as these could be dependent · c932298c
  Ian Longden authored 13 years ago
  
  c932298c
- Corrected syntax · 90acdec1
  Monika Komorowska authored 13 years ago
  
  90acdec1
- Updated TYPE=MyISAM to ENGINE=MyISAM, as TYPE is deprecated and can cause problems with MySQL 5.5 · 05a6449c
  Anne Parker authored 13 years ago
  
  05a6449c
- Field dbprimary_acc_linkable removed from external_db. · e992cd08
  Monika Komorowska authored 13 years ago
  
  e992cd08
- Deleted column dbprimary_acc_linkable. · e1794a0c
  Monika Komorowska authored 13 years ago
  
  e1794a0c
- Small script to increment the version number of entries in the gene_stable_id... · 5d6b6acf
  Rhoda Kinsella authored 13 years ago
```
Small script to increment the version number of entries in the gene_stable_id table in the human rnaseq database that have the same stable_id
```
  5d6b6acf
- Format change, so parsing altered accordingly · 7f9033d8
  Ian Longden authored 13 years ago
  
  7f9033d8
May 10, 2011
- RGD source file name change · 35acc7eb
  Ian Longden authored 13 years ago
  
  35acc7eb
- check if value is defined else set to \N · 5f9ce57d
  Ian Longden authored 13 years ago
  
  5f9ce57d
- match table.sql and pacth to be exactly the same · 073423e5
  Ian Longden authored 13 years ago
  
  073423e5
- Added sus_scrofa species. · 1b66494d
  Monika Komorowska authored 13 years ago
  
  1b66494d
- Added patch identifier · 8e04c4e0
  Monika Komorowska authored 13 years ago
  
  8e04c4e0
May 09, 2011
- Modified the handling of left join in generic_fetch to allow aliasing left joined tables · 6091bb35
  Pontus Larsson authored 13 years ago
  
  6091bb35
- sqlite engine support added for eHive · 38a39820
  Leo Gordon authored 13 years ago
  
  38a39820
- Fix bug with MODIFY and anal_idx · 8b713994
  Thibaut Hourlier authored 13 years ago
  
  8b713994
- Stored procedure to delete duplicates from table unmapped_object. · cfb85580
  Monika Komorowska authored 13 years ago
  
  cfb85580
May 08, 2011
- adding new methods: take, skip and reduce, and allowing you to construct an... · 9214cd53
  Graham Ritchie authored 13 years ago
```
adding new methods: take, skip and reduce, and allowing you to construct an iterator from an arrayref
```
  9214cd53
- adding tests for new iterator methods · 634cae25
  Graham Ritchie authored 13 years ago
  
  634cae25
May 06, 2011
- Changes for patches 62_63 a, b and c · 91aa9a30
  Monika Komorowska authored 13 years ago
  
  91aa9a30
- *** empty log message *** · 18632430
  Monika Komorowska authored 13 years ago
  
  18632430
- Applied changes for patches a,b,c for release 63. · df1b30ee
  Monika Komorowska authored 13 years ago
  
  df1b30ee
- Updated API version to 63. · 4517d0d8
  Monika Komorowska authored 13 years ago
  
  4517d0d8
May 05, 2011
- added puccinia triticina species · 8e7660f7
  Helder Pedro authored 13 years ago
  
  8e7660f7
- module for uniprot genename · 057797a0
  Helder Pedro authored 13 years ago
  
  057797a0
- Updated instructions for creating an ontology database · 36ab2d21
  Monika Komorowska authored 13 years ago
  
  36ab2d21
- Check if $end is defined in fetch_by_Slice_start_end_strand at line 149 · 8158ad72
  Monika Komorowska authored 13 years ago
  
  8158ad72
- make sure each transcript even if it is in a differernt gene have differernt... · ddc4d592
  Ian Longden authored 13 years ago
```
make sure each transcript even if it is in a differernt gene have differernt transcript ext for the same gene name
```
  ddc4d592
May 04, 2011
- fix for recalculationg display xrefs · de829dd1
  Ian Longden authored 13 years ago
  
  de829dd1
- Made SQL easier to read and processed alt alleles · adb8a66a
  Ian Longden authored 13 years ago
  
  adb8a66a
May 03, 2011
- Deleted field dbprimary_acc_linkable · 76133158
  Monika Komorowska authored 13 years ago
  
  76133158
- Add new parameter to ini file 'taxon', taxon parameter value.pm module will be · 7b8f8b9a
  Monika Komorowska authored 13 years ago
```
used to process the mappings if species.pm file is not found.
```
  7b8f8b9a