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- Dec 20, 2004
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Ian Longden authored
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Daniel Rios authored
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Glenn Proctor authored
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Glenn Proctor authored
Deal with 2 different sources instead of just one - RefSeq_peptide & RefSeq_dna - since Mart needs one type per source.
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Glenn Proctor authored
Modified appropriate source_url entries as well.
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Ian Longden authored
fix bug that if -dumpcheck set and files not found then the script failed instead of dumping the files
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Glenn Proctor authored
Species-specific display_xref priorities for tetraodon. Same as in BasicMapper but Genoscope_* order reversed.
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Glenn Proctor authored
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Glenn Proctor authored
Make all external_synonym entries unique. Corrected location from which display_xref .sql files are uploaded.
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Glenn Proctor authored
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- Dec 17, 2004
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Ian Longden authored
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- Dec 16, 2004
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Ian Longden authored
fix for no species being specified and more than one core database bring called (connection was not dropped)
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
Fixed calculation of transcript display_xrefs; wasn't considering translation-transcript relationship properly. Now use | as separator character in composite hash keys; : was a bad choice since it appears in GO xrefs. Don't write xref/object_xrefs for sources that have no corresponding external_db entry (but warn about this).
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- Dec 15, 2004
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Glenn Proctor authored
Set label to accession if it's not set otherwise (so that something gets displayed on the web site). Check all object_xrefs are unique. Still problem with gene display_xrefs.
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Glenn Proctor authored
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Glenn Proctor authored
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Ian Longden authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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- Dec 14, 2004
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Patrick Meidl authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
Improved usage docs.
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Eugene Kulesha authored
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- Dec 13, 2004
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Glenn Proctor authored
No longer write external_db table from source table, since external_db is defined in CVS. Now builds source_idd->external_db_id mapping and writes external_db_id to xref.txt. Added external_db and version to core xref output.
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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