This project is mirrored from https://:*****@github.com/Ensembl/otter-client.git.
Pull mirroring updated .
- May 16, 2019
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Marek Szuba authored
_otter_env_core.sh: remove proxy autoconfiguration
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Marek Szuba authored
This particular bit of code only does something when on the Sanger network, probably doesn't do anything useful even when on the Sanger network now that Otter servers are on Embassy, and on some machines attempting to retrieve the local FQDN while on the EBI network visibly delays start-up of the Otter client.
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- Apr 02, 2019
- Mar 22, 2019
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Marek Szuba authored
Remove precompiled binaries and related files
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- Mar 21, 2019
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Marek Szuba authored
Particularly important for when Perl dependencies of Otter are installed by an unprivileged user, in which case they are likely to end up in a directory pointed to by said environment variable rather than one configured in a different fashion. Warning: it is important that we *prepend* Otter directories to PERL5LIB rather than append them because it turns out that having existing PERL5LIB point to an Ensembl installation confuses the Otter client.
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- Mar 13, 2019
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Marek Szuba authored
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Marek Szuba authored
They are installed by cpanm now, moreover the latter is a native module and thus contains a compiled shared library. Plus, you know, there were two separate copies of it.
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Marek Szuba authored
Not quite sure what these were doing here in the first place, given there are no traces of bundled htslib anywhere else in this repository. Possibly an artifact of zmap installation.
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Marek Szuba authored
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Marek Szuba authored
These are all the pure-Perl scripts that the previous commit did not catch.
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Marek Szuba authored
seqtools and zmap in otter directories, mostly an old version of samtools in anacode/bin.
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- Mar 12, 2019
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Tiago Grego authored
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- Nov 28, 2018
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Shamika Mohanan authored
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- Oct 31, 2018
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Shamika Mohanan authored
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Shamika Mohanan authored
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- Oct 01, 2018
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s-mm authored
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s-mm authored
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Shamika Mohanan authored
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