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Commit 060923e6 authored by zmap's avatar zmap
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new zmap release notes for 14 January 2010

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<!-- File automatically generated. Do not edit. --!>
<!--#set var="banner" value="ZMap Release Notes For '14 January 2010'" -->
<!--#include virtual="/perl/header" -->
<!--#set var="author" value="edgrif@sanger.ac.uk" -->
<!-- The release version, etc... --!>
<h5>Release Version: ZMap 0.1.78 </h5>
<h5>Release Date: 14 January 2010</h5>
<p>
(Last release was on 22/12/2009)
</p>
<h5>Request Tracker Tickets Resolved</h5>
<br />
<!-- Now the resolved tickets... --!>
<!-- Finished getting the resolved request tracker tickets --!>
<fieldset><legend>zmap</legend>
<ul>
<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=152171">152171</a>, Resolved (Wed Jan 06 10:02:42 2010)
<p>Zmap not running error</p>
<p>cas@sanger.ac.uk</p>
</li>
<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=153909">153909</a>, Resolved (Wed Jan 13 16:11:52 2010)
<p>Highlighting single exons within a transcript fails</p>
<p>ca1@sanger.ac.uk</p>
</li>
<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=154125">154125</a>, Resolved (Mon Jan 11 11:59:28 2010)
<p>Zmap crashing in test_otterlace</p>
<p>al1@sanger.ac.uk, mpk@sanger.ac.uk</p>
</li>
<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=154169">154169</a>, Resolved (Tue Jan 12 09:30:45 2010)
<p>zmap saves incorrect format in clipboard for transcripts</p>
<p>gr5@sanger.ac.uk</p>
</li>
</ul>
</fieldset><br />
<!-- End of tickets --!>
<fieldset>
<legend>ZMap Changes/Fixes [from cvs]</legend>
<ul>
<li><!-- --- Start editing ZMap changes here... --- --!>
<a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/ZMap/?root=zmap">Browse CVS</a>
</li>
<li> doc/Release_notes/release_notes.2009_12_22.shtml: new zmap
release notes for 22 December 2009
</li>
<li> src/include/ZMap/zmapWebPages.h: update release notes file to
release_notes.2009_12_22.shtml
</li>
<li> doc/Release_notes/LAST_RELEASE_DATE.txt: update last release
notes to 22/12/2009
</li>
<li> src/zmapUtils/zmapUtils_P.h:
/var/tmp/zmap.12678/ZMap/scripts/versioner run by zmap
</li>
<li> src/: include/ZMap/zmapStyle.h, zmapConfig/zmapConfigLoader.c,
zmapFeature/zmapStyle.c, zmapFeature/zmapStyleUtils.c,
zmapFeature/zmapStyle_I.h,
zmapWindow/items/zmapWindowCollectionFeature.c,
zmapWindow/items/zmapWindowGlyphItem.c,
zmapWindow/items/zmapWindowGlyphItem.h: added slash glyphs and
style config options
</li>
<li> src/zmapFeature/zmapFeatureData.c: corrected rather obvious cut
and paste error on line 64 - GRAPH mode set as GLYPH
</li>
<li> src/: zmapFeature/zmapStyle.c,
zmapWindow/items/zmapWindowCollectionFeature.c: default for
homology glyphs as previous hard coded values fixef temporarily
</li>
<li> src/: include/ZMap/zmapStyle.h, zmapConfig/zmapConfigLoader.c,
zmapDraw/zmapDraw.c, zmapFeature/zmapStyle.c,
zmapFeature/zmapStyle_I.h,
zmapWindow/items/zmapWindowBasicFeature.c,
zmapWindow/items/zmapWindowCollectionFeature.c,
zmapWindow/items/zmapWindowGlyphItem.c: free glyphs now work w/
styles config w/ outline and fill colours and glyph type; default
fill colour broken mysteriously
</li>
<li> src/zmapWindow/items/: zmapWindowBasicFeature.c,
zmapWindowGlyphItem.c: changed glyph set color to use GdkColor
as per code usage
</li>
<li> src/zmapThreads/zmapThreadsUtils.c: replace CLK_TCK macro with
CLOCKS_PER_SEC which is new POSIX.
</li>
<li> src/zmapWindow/zmapWindow.c: fix pasting of transcript exon
coords into selection buffer.
</li>
<li> src/zmapWindow/zmapWindowColBump.c: homol sets must now be hashed
to include the match strand, also partial fix to undoing colinear
markers.
</li>
<li> src/zmapView/zmapViewCallBlixem.c: fix bug in exon/intron output
(missing match strand), fix permissions for tmp dir and files.
</li>
<li> src/zmapWindow/: zmapWindow.c, zmapWindowFeature.c,
zmapWindowItem.c: fix highlighting for shift-click to just
highlight a single exon.
</li>
<li> src/zmapWindow/zmapWindowItemFactory.c: fix compiler warning for
missing cast.
</li>
<li> src/zmapWindow/items/: zmapWindowCanvasItem.c,
zmapWindowCanvasItem.h: fix highlighting of sub-parts of an
object.
</li>
<li> src/zmapWindow/items/zmapWindowCanvasItem_I.h: tidy up some
comments etc.
</li>
<li> src/: include/ZMap/zmapServerProtocol.h, zmapServer/zmapServer.c,
zmapServer/zmapServer.h, zmapServer/zmapServerProtocolHandler.c,
zmapServer/zmapServerPrototype.h, zmapServer/acedb/acedbServer.c,
zmapServer/das/dasServer.c, zmapServer/pipe/pipeServer.c: get the
source data struct returned to view.
</li>
<li> src/include/ZMap/zmapXRemote.h: add code for failed command.
</li>
<li> src/zmapUtils/zmapXRemoteUtils.c: add failed command code.
</li>
<li> src/zmapView/zmapView.c: retrieve source data info, e.g. suorce
style.
</li>
<li> src/zmapView/zmapViewRemoteReceive.c: add look up of feature
style from source data info., add better error handling for
feature create.
</li>
<li> src/zmapView/zmapView_P.h: add source data hash to view state.
</li>
<li> src/zmapWindow/zmapWindowColBump.c: removed memory leak on
colbumprange
<!-- --- End editing ZMap changes here... --- --!>
</li>
</ul>
</fieldset>
<br />
<fieldset>
<legend>Aceb Changes/Fixes [from cvs]</legend>
<ul>
<li><!-- --- Start editing ACeDB changes here... --- --!>
<a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/acedb/?root=acedb">Browse CVS</a>
</li>
<li> w9/blxview.c: RT153706: Fixed bug where could not select an MSP
because it thought it was already selected
<!-- --- End editing ACeDB changes here... --- --!>
</li>
</ul>
</fieldset>
<br />
<!--#include virtual="/perl/footer" -->
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