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PARITY A python module to compare chemical structures of molecules using SMILES strings. Originally developed by Jon Tyzack at EMBL-EBI (https://doi.org/10.1016/j.str.2018.02.009)

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

Docker files for Metagenomics Bioinformatics Taxonomy session.

Docker files for Metagenomics Bioinformatics Quince session.

PDBsum1 is a standalone vesrion of PDBsum Generate for local installation and running.

It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.

Docker files for Metagenomics Bioinformatics QC session.

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

This is a collection of mockups for the USI/Data Submissions project

Dockerfile for e-Learning Transcriptomics CABANA 2018

A few starter examples of ansible playbooks, to show features and how they work together. See http://galaxy.ansible.com for example roles from the Ansible community for deploying many popular applications.

The EMBL-EBI Visual Framework for websites and services.

NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES, TAGGING IN GITHUB ONLY.

IMPC statistical pipeline docker image

Docker image for Metagenomics Bioinformatics Assembly session.

This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.