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Quick demonstration of server that displays indications sections of DailyMed structured product labels (SPLs, i.e. drug labels). The SPLs are exposed in their own URLs which serve as a static location so that they can be annotated with hypothes.is.

dynamicTreeCut (from R) implemented in Python. Forked from https://github.com/kylessmith/dynamicTreeCut to fix bugs and maybe add features

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Predoc course, QBM module, image analysis challenge

PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data. The documentation can be found at: http://pdbe.gitdocs.ebi.ac.uk/PDBeCIF/

Soon-to-be-legacy templates generating pipeline. CSA-3D will replace it eventually

PARITY A python module to compare chemical structures of molecules using SMILES strings. Originally developed by Jon Tyzack at EMBL-EBI (https://doi.org/10.1016/j.str.2018.02.009)

BGC detection tool

DIA-reanalysis pipeline code and results

SMBGC detection tool

OAuth + JupyterHub Authenticator = OAuthenticator

Simple Python client to upload images on Openstack.