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A solution to enable building and managing a Spark/Hadoop cluster on the EMBL-EBI Codon Slurm HPC cluster

This project defines a delayed job that runs biological sequence searches (BLAST).

This project defines a delayed job that can be used to test that all the system works.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

Job that generates an image of a heatmap to use it as a guide for the visualisation.

The template matching software Jess, first written by Jonathan Barker

This repo contains the code to analyse the data for assemblies manuscript

FunPDBe Validator client that can parse and validate FunPDBe JSON files

EMBL publications annual report

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

Django package containing chebi models.

BioPython with some changes I am making in the PDB package to fit best to my projects