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ensembl-gh-mirror
Merge requests

Open 10
Merged 1,904
Closed 363
All 2,277

Priority Created date Updated date Milestone due date Popularity Label priority Title

[ENSCORESW-2708] added pull request template

ensembl-io!58 · created Apr 19, 2018 by Marek Szuba release/93
- MERGED
- 3
updated Dec 17, 2018
Support for a single fasta sequence from a slice using the unified de…

ensembl-io!46 · created Aug 05, 2016 by Marek Szuba experimental/unified-design
- CLOSED
- 3
updated Dec 15, 2017
Add VCF4 format for validation

ensembl-io!56 · created Jul 13, 2017 by Marek Szuba master
- MERGED
- 3
updated Jul 19, 2017
Rework on how Bio::DB::HTS is used in HTSAdaptor

ensembl-io!55 · created Jun 28, 2017 by Marek Szuba master
- MERGED
- 10
updated Jul 19, 2017
Improvements to munge_chr_id subroutine in HTSAdaptor

ensembl-io!51 · created Oct 05, 2016 by Marek Szuba master
- MERGED
- 1
updated Dec 17, 2018
Experimental/unified design

ensembl-io!54 · created Jun 21, 2017 by Marek Szuba experimental/unified-design
- MERGED
- 5
updated Jun 30, 2017
Experimental/unified design

ensembl-io!53 · created Jun 13, 2017 by Marek Szuba experimental/unified-design
- CLOSED
- 1
updated Jun 21, 2017
Fix minor issue in POD

Bio-DB-HTS!71 · created Apr 21, 2018 by Marek Szuba master
- MERGED
- 1
updated Apr 22, 2018
Update URL.pm

ensembl-io!41 · created May 20, 2016 by Marek Szuba master
- MERGED
- 0
updated May 24, 2016
specify only start when seeking a region

ensembl-io!44 · created Jul 06, 2016 by Marek Szuba master
- CLOSED
- 3
updated Apr 20, 2017
Bio::DB::HTS requirements added to README

ensembl-io!36 · created Apr 28, 2016 by Marek Szuba master
- MERGED
- 0
updated Apr 28, 2016
Create Bio::DB::HTS using static libhts

Bio-DB-HTS!7 · created Mar 16, 2016 by Marek Szuba master
- CLOSED
- 1
updated Mar 16, 2016
Munge for Chr in HTSAdaptor as was for BAM Adaptor

ensembl-io!39 · created May 09, 2016 by Marek Szuba master
- CLOSED
- 1
updated May 09, 2016
htsfile close function added

ensembl-io!35 · created Apr 15, 2016 by Marek Szuba master
- MERGED
- 0
updated Apr 15, 2016
Remove empty genotype strings

ensembl-io!34 · created Apr 12, 2016 by Marek Szuba master
- CLOSED
- 1
updated May 05, 2016
First try for a VCF4 writer

ensembl-io!48 · created Aug 12, 2016 by Marek Szuba experimental/unified-design
- MERGED
- 31
updated Jan 09, 2017
exclude samples with uncalled genotypes

ensembl-io!38 · created May 05, 2016 by Marek Szuba release/84
- MERGED
- 2
updated May 06, 2016
correct tabix header function called in PairwiseAdaptor.pm

ensembl-io!47 · created Aug 10, 2016 by Marek Szuba master
- MERGED
- 0
updated Dec 17, 2018
Fixing the test suite and bits of io

ensembl-io!33 · created Mar 23, 2016 by Marek Szuba master
- CLOSED
- 10
updated Apr 19, 2017
exclude samples with uncalled genotypes

ensembl-io!37 · created May 05, 2016 by Marek Szuba master
- MERGED
- 0
updated May 05, 2016

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