Merge requests · Microbiome Informatics / emg-viral-pipeline

Merge trains

Update containers, nf trace compatible now. Some to biocontainers.

!81 · created Nov 26, 2022 by Martin Beracochea dev
- Merged
- 2
updated Jan 05, 2023
CheckV - prophages fixes and post processing gff creation step

!80 · created Nov 25, 2022 by Martin Beracochea dev
- Merged
- 3
updated Jan 05, 2023
Clean up

!78 · created Oct 08, 2022 by Martin Beracochea dev
- Merged
- 2
- Approved
updated Oct 10, 2022
Merge DEV

!76 · created Sep 29, 2022 by Martin Beracochea
- Merged
- 1
updated Oct 04, 2022
Pprmeta repo fix

!75 · created Sep 17, 2022 by Martin Beracochea dev
- Merged
- 4
- Approved
updated Sep 29, 2022
Merge DEV into Master

!63 · created Oct 19, 2021 by Martin Beracochea
- Merged
- 10
updated Oct 20, 2021
deactivate tower nf extension and simplify nf version check

!59 · created Oct 18, 2021 by Martin Beracochea dev
- Merged
- 2
- Approved
updated Oct 19, 2021
CheckV tool inclusion in the CWL version of the pipeline.

!58 · created Oct 16, 2021 by Martin Beracochea dev
- Merged
- 1
updated Oct 19, 2021
Checkv

!57 · created Oct 01, 2021 by Martin Beracochea dev
- Merged
- 7
- Approved
updated Oct 16, 2021
Virify - MGnify protein MGYP assign step (CWL).

!56 · created Jul 02, 2021 by Martin Beracochea dev
cwl stale
- 2
updated Oct 04, 2022
Dev martinh

!55 · created Jun 21, 2021 by Martin Beracochea dev
- Merged
updated Jun 21, 2021
Dev martinh

!54 · created Jun 18, 2021 by Martin Beracochea
- Merged
- 1
- Approved
updated Jun 21, 2021
Nextflow version req patch

!53 · created May 26, 2021 by Martin Beracochea
- Merged
- 3
updated May 26, 2021
Merge dev into master

!52 · created May 26, 2021 by Martin Beracochea
updated May 26, 2021
Logo

!48 · created Apr 12, 2021 by Martin Beracochea dev
- Merged
- 1
updated Apr 26, 2021
Re-organiza CWL version outputs and fixes:

!46 · created Feb 23, 2021 by Martin Beracochea dev
- Merged
- 7
updated Feb 24, 2021
Preparation for "merge" viral pipeline into assembly pipeline

!44 · created Feb 10, 2021 by Martin Beracochea dev
- Closed
updated Jul 02, 2021
Dev

!43 · created Jan 29, 2021 by Martin Beracochea
updated Jan 29, 2021
Upgrade CWL from v1.2.0-dev to stable v1.2

!42 · created Jan 29, 2021 by Martin Beracochea dev
- Merged
updated Jan 29, 2021
Dev

!41 · created Jan 12, 2021 by Martin Beracochea
- Merged
- 7
updated Jan 20, 2021