Skip to content
Snippets Groups Projects
Commit c2b5775f authored by Steve Trevanion's avatar Steve Trevanion
Browse files

skip transcripts that have a ribosomal_frameshift as well as those having the...

skip transcripts that have a ribosomal_frameshift as well as those having the specific '_rib_frameshift' attribute
parent c4d39b7a
No related branches found
No related tags found
No related merge requests found
......@@ -255,6 +255,12 @@ sub check_for_stops {
next TRANS;
}
}
foreach my $attrib (@{$trans->get_all_Attributes('hidden_remark')}) {
if ($attrib->value eq 'ribosomal_frameshift') {
$log_object->_save_log('log', '', $gsi, '', $tsi, '', "Skipping $tsi ($tname) since it has a ribosomal frameshift hidden_remark");
next TRANS;
}
}
#$support->log_verbose("Studying transcript $tsi ($tname, $tID)\n",1);
$log_object->_save_log('log_verbose', '', $gsi, '', $tsi, '', "Studying transcript $tsi ($tname, $tID)");
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment