README

docs/long_mult_pipeline.conf

docs/long_mult_sema_pipeline.conf

modules/Bio/EnsEMBL/Hive/AnalysisJob.pm

modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm

modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm

modules/Bio/EnsEMBL/Hive/Process.pm

modules/Bio/EnsEMBL/Hive/Queen.pm

modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm

modules/Bio/EnsEMBL/Hive/RunnableDB/LongMult/SemaStart.pm

modules/Bio/EnsEMBL/Hive/RunnableDB/LongMult/Start.pm

modules/Bio/EnsEMBL/Hive/Utils.pm

modules/Bio/EnsEMBL/Hive/Worker.pm

scripts/init_pipeline.pl

sql/patch_2010-03-24.sql

sql/tables.sql