Commits · 048df0fb485c9288e987f3dd2380bdc029df5e41 · ensembl-gh-mirror / ensembl-hive · GitLab

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This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 21 minutes ago.

Mar 26, 2010
- "dataflow made friendly", untested · 048df0fb
  Leo Gordon authored 15 years ago
  
  048df0fb
Mar 24, 2010
- full name for family_pipeline.conf · 41864ab2
  Leo Gordon authored 15 years ago
  
  lg4_pre_rel58_20090322
  
  41864ab2
Mar 23, 2010
- fixing a bug introduced by changing init_pipeline script · b0a8c2c4
  Leo Gordon authored 15 years ago
  
  b0a8c2c4
- adding a new flow_into format, but still supporting the old one · 824dc0d6
  Leo Gordon authored 15 years ago
  
  824dc0d6
- some users are concerned about "bsub" command crashing; now this should cause the beekeeper to exit · 4e594fa1
  Leo Gordon authored 15 years ago
  
  4e594fa1
- a rename suggested by Pablo · bcda450d
  Leo Gordon authored 15 years ago
  
  bcda450d
- allow to return a hashref - suggested by Pablo · 1b576c21
  Leo Gordon authored 15 years ago
  
  1b576c21
Mar 22, 2010
- new changes before release 58 production start · f68498d6
  Leo Gordon authored 15 years ago
  
  f68498d6
Mar 19, 2010
- user request: to allow the at-sign in the password and still parse the url correctly · 49c94ddd
  Leo Gordon authored 15 years ago
  
  49c94ddd
- renamed lsf_options into meadow_options - more general · 25972a67
  Leo Gordon authored 15 years ago
  
  25972a67
Mar 10, 2010
- more deterministic stringification · f835b8cc
  Leo Gordon authored 15 years ago
  
  f835b8cc
Mar 08, 2010
- moved dbconn_2_url to init_pipeline for less confusion · 1e81e350
  Leo Gordon authored 15 years ago
  
  1e81e350
- support for pipeline-wide parameters (untested) · c0557bae
  Leo Gordon authored 15 years ago
  
  c0557bae
Mar 04, 2010
- fix the worker_quota (untested) · a6aec8ca
  Leo Gordon authored 15 years ago
  
  a6aec8ca
Feb 27, 2010
- less dependency on perl location · 4c97f791
  Leo Gordon authored 15 years ago
  
  4c97f791
Feb 26, 2010
- patch for older hive databases · faa24c98
  Leo Gordon authored 15 years ago
  
  faa24c98
- a simpler example added · 28a8209b
  Leo Gordon authored 15 years ago
  
  28a8209b
- renamed HL into Hive, swapped iteration and rc_id · 8e18e9d3
  Leo Gordon authored 15 years ago
  
  8e18e9d3
- make it possible for eHive to work without Compara · c5d11ece
  Leo Gordon authored 15 years ago
  
  c5d11ece
- rename complex columns · 8a7b8c2d
  Leo Gordon authored 15 years ago
  
  8a7b8c2d
- less dependency on non-defined rc_xparams · 1dc5459b
  Leo Gordon authored 15 years ago
  
  1dc5459b
Feb 25, 2010
- testing resource requirements · 7d55c42a
  Leo Gordon authored 15 years ago
  
  7d55c42a
Feb 23, 2010
- process_id code moved to Meadow, bk detection makes setting this option useless · 5bdd25c8
  Leo Gordon authored 15 years ago
  
  5bdd25c8
- easier to read · 014ee4f4
  Leo Gordon authored 15 years ago
  
  014ee4f4
Feb 19, 2010
- add the analysis_id to the report · 9a567ea8
  Leo Gordon authored 15 years ago
  
  9a567ea8
- bug fix · dc46d74b
  Leo Gordon authored 15 years ago
  
  dc46d74b
Feb 18, 2010
- has to be in sync with compara analysis table definition · 7f04a0c1
  Leo Gordon authored 15 years ago
  
  7f04a0c1
- support for dataflow/ctrl outside of the main analysis loop; support for topup mode · 5058ff75
  Leo Gordon authored 15 years ago
  
  5058ff75
Feb 17, 2010
- *** empty log message *** · 69f10a04
  Leo Gordon authored 15 years ago
  
  69f10a04
- parameter substitution defined in the parent class · 586a73ea
  Leo Gordon authored 15 years ago
  
  586a73ea
Feb 16, 2010
- Planned to be a universal pipeline loader. Let's see... · 2bb0b66f
  Leo Gordon authored 15 years ago
  
  2bb0b66f
- more flexibility (analysis may have been created already) · 9dae754c
  Leo Gordon authored 15 years ago
  
  9dae754c
Feb 15, 2010
- simplifications leading to new functionality · 0ddaed4c
  Leo Gordon authored 15 years ago
  
  0ddaed4c
Feb 04, 2010
- add some useful server-side procedures to the hive · d2293960
  Leo Gordon authored 15 years ago
  
  d2293960
Jan 26, 2010
- 4 levels of hierarchy · 10271cee
  Leo Gordon authored 15 years ago
  
  10271cee
Jan 25, 2010
- generic CommandLine and generic (My)SQLcommand execution with parameter substitutions · 882bd936
  Leo Gordon authored 15 years ago
  
  882bd936
Jan 22, 2010
- new modes added, needs examples · abdb599f
  Leo Gordon authored 15 years ago
  
  abdb599f
- use sth->finish · 5f35abd6
  Leo Gordon authored 15 years ago
  
  5f35abd6
Jan 16, 2010
- added "eval" option for JobFactory module · ebd73970
  Leo Gordon authored 15 years ago
  
  ebd73970
Jan 11, 2010
- experimental implementation of counting semaphores (see docs) · 2a41ca6f
  Leo Gordon authored 15 years ago
  
  2a41ca6f