Commits · 969a3bce874e18d792b5f30e5a4f40f3e2b57005 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 3 minutes ago.

Sep 09, 2010
- some methods moved into proper Adaptors (extending the Core adaptors) · 969a3bce
  Leo Gordon authored 14 years ago
  
  969a3bce
- moved autoflow where it belongs - into the AnalysisJob · 27633e4a
  Leo Gordon authored 14 years ago
  
  27633e4a
Sep 08, 2010
- try to avoid name and pid collisions · 61ef5b2e
  Leo Gordon authored 14 years ago
  
  61ef5b2e
- typo · c3974355
  Leo Gordon authored 14 years ago
  
  c3974355
- try to avoid name collisions · bf9e509a
  Leo Gordon authored 14 years ago
  
  bf9e509a
Sep 07, 2010
- restore the default state of autoflow for reach job · 83e51aaf
  Leo Gordon authored 14 years ago
  
  83e51aaf
- *** empty log message *** · f252575f
  Leo Gordon authored 14 years ago
  
  f252575f
Sep 04, 2010
- untangling some knots · 35fcc20d
  Leo Gordon authored 14 years ago
  
  35fcc20d
Sep 03, 2010
- unification of inheritance syntax · 0d1b4a80
  Leo Gordon authored 14 years ago
  
  0d1b4a80
- too many pids on one line may lead to failure, so let us take some measures · 20177135
  Leo Gordon authored 14 years ago
  
  20177135
- added analysis_id column to job_message table - it is much more convenient that way · 29290692
  Leo Gordon authored 14 years ago
  
  29290692
- less talkative adaptor · 5d6af542
  Leo Gordon authored 14 years ago
  
  5d6af542
- do all baccts in one go - should save some time · 654f6481
  Leo Gordon authored 14 years ago
  
  654f6481
Sep 02, 2010
- bugfix? · cbd22c2e
  Leo Gordon authored 14 years ago
  
  cbd22c2e
- streamlined some code · 81f9f84d
  Leo Gordon authored 14 years ago
  
  81f9f84d
- let MEMLIMIT jobs leave a trace in job_message and die from first attempt · 7299c868
  Leo Gordon authored 14 years ago
  
  7299c868
Sep 01, 2010
- bugfix · fede927d
  Leo Gordon authored 14 years ago
  
  fede927d
- the worker_pid may contain index part and should be enquoted · 137109e1
  Leo Gordon authored 14 years ago
  
  137109e1
- small fix · 2c14887e
  Leo Gordon authored 14 years ago
  
  2c14887e
- try to detect MEMLIMIT or RUNLIMIT states · c9b4cacb
  Leo Gordon authored 14 years ago
  
  c9b4cacb
Aug 31, 2010
- The system must be able to differentiate between user- and farm-sanctioned killing of workers · 3f17d66c
  Leo Gordon authored 14 years ago
  
  3f17d66c
Aug 24, 2010
- an attempt to allow multiple users' beekeepers to keep one hive (needs more testing) · f486d5ba
  Leo Gordon authored 14 years ago
  
  f486d5ba
- only import these methods · 0760257c
  Leo Gordon authored 14 years ago
  
  0760257c
Aug 23, 2010
- job_error table becomes known as job_message (with an extra flag) · 357a48ca
  Leo Gordon authored 14 years ago
  
  357a48ca
- Worker reports the reason why it decides to die + good working example · c5c37794
  Leo Gordon authored 14 years ago
  
  c5c37794
Aug 20, 2010
- typo fix · 09649a2e
  Leo Gordon authored 14 years ago
  
  09649a2e
- typo fix · ba833be5
  Leo Gordon authored 14 years ago
  
  ba833be5
- adding ability to jobs to throw and record messages on success (plus other cleanup bits) · d5f534d8
  Leo Gordon authored 14 years ago
  
  d5f534d8
Aug 13, 2010
- default behaviour on whether to retry failing jobs by default or not is now centrally-controllable · df8280ab
  Leo Gordon authored 14 years ago
  
  df8280ab
- return 1 in fetch_input and run to be compliant with new rules on worker running flow · ca8a48cb
  Javier Herrero authored 14 years ago
  
  ca8a48cb
- Better support for adding new jobs to an existing analysis. Also, supports adding one single job · 48f4c268
  Javier Herrero authored 14 years ago
  
  48f4c268
- let jobs decide whether it makes any sense to restart them or not · 26f27a0f
  Leo Gordon authored 14 years ago
  
  26f27a0f
Aug 12, 2010
- allow Runnables to cut corners · a76de6b6
  Leo Gordon authored 14 years ago
  
  a76de6b6
- renamed for clarity · adc1a38a
  Leo Gordon authored 14 years ago
  
  adc1a38a
Aug 11, 2010
- job_error table now holds jobs' termination messages; workers do not die when... · f27c721c
  Leo Gordon authored 14 years ago
```
job_error table now holds jobs' termination messages; workers do not die when jobs die, but can be instructed to to so
```
  f27c721c
Aug 10, 2010
- a pipeline to test the FailureTest · c1df377e
  Leo Gordon authored 14 years ago
  
  c1df377e
Aug 09, 2010
- lets give it a more meaningful name · 17b1100e
  Leo Gordon authored 14 years ago
  
  17b1100e
Aug 05, 2010
- *** empty log message *** · 7bc7f7c3
  Leo Gordon authored 14 years ago
  
  7bc7f7c3
Jul 16, 2010
- dir_revhash is now an importable Util subroutine that is used by both Worker and JobFactory · 1b933558
  Leo Gordon authored 14 years ago
  
  1b933558
- make it possible for beekeepeer script to set/override hive_output_dir for the... · e9226c6b
  Leo Gordon authored 14 years ago
```
make it possible for beekeepeer script to set/override hive_output_dir for the workers from the command line
```
  e9226c6b