Merge requests · ensembl-gh-mirror / ensembl-io · GitLab

First try for a VCF4 writer

!48 · created Aug 12, 2016 by Marek Szuba experimental/unified-design
- Merged
- 31
updated Jan 09, 2017
EnsEMBL::Web::Tree changed

!49 · created Sep 05, 2016 by Marek Szuba master
- Merged
updated Dec 17, 2018
fix for slightly clumsy passing of args to synonym methods

!11 · created Jun 02, 2015 by Marek Szuba master
- Merged
updated Jun 02, 2015
Munge for Chr in HTSAdaptor as was for BAM Adaptor

!39 · created May 09, 2016 by Marek Szuba master
- Closed
- 1
updated May 09, 2016
Add some new features and fixes for the VCF backend code in the Variation API

!2 · created Oct 08, 2014 by Marek Szuba variation
- Merged
updated Oct 08, 2014
Rework on how Bio::DB::HTS is used in HTSAdaptor

!55 · created Jun 28, 2017 by Marek Szuba master
- Merged
- 10
updated Jul 19, 2017
Fix of hard coded test data file paths in tests

!63 · created Aug 13, 2018 by Marek Szuba master
- Merged
updated Aug 13, 2018
[ENSCORESW-2708] added pull request template

!58 · created Apr 19, 2018 by Marek Szuba release/93
- Merged
- 3
updated Dec 17, 2018
specify only start when seeking a region

!44 · created Jul 06, 2016 by Marek Szuba master
- Closed
- 3
updated Apr 20, 2017
htsfile close function added

!35 · created Apr 15, 2016 by Marek Szuba master
- Merged
updated Apr 15, 2016
Don't use Try::Tiny as it doesn't work with BigFile code on web

!78 · created Feb 18, 2019 by Marek Szuba release/96
- Closed
- 6
updated Feb 25, 2019
Existing TABIX functionality via Bio::DB::HTS

!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
Do not inherit parent html if track has its own html in hubs

!20 · created Oct 08, 2015 by Marek Szuba master
- Closed
- 4
updated Mar 24, 2016
License was not correct. This is an Apache2 project.

!14 · created Aug 17, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015
exclude samples with uncalled genotypes

!38 · created May 05, 2016 by Marek Szuba release/84
- Merged
- 2
updated May 06, 2016
Experimental/unified design

!54 · created Jun 21, 2017 by Marek Szuba experimental/unified-design
- Merged
- 5
updated Jun 30, 2017
Feature/blast parser

!1 · created Jul 11, 2014 by Marek Szuba master
- Merged
updated Dec 17, 2018
Update travis harness to point to the correct Bio-HTS lib version

!52 · created May 11, 2017 by Marek Szuba experimental/unified-design
- Merged
- 1
updated May 11, 2017
porting of PR 70 to master

!71 · created Dec 14, 2018 by Marek Szuba master
- Merged
updated Dec 17, 2018
Update BaseVCF4.pm

!12 · created Jun 18, 2015 by Marek Szuba master
- Closed
- 4
updated Aug 20, 2015

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