Newer
Older
210 Anopheles_symbol 1 KNOWN 1 0 50 Anopheles symbol MISC \N \N
211 VB_Community_Symbol 1 KNOWN 1 0 50 VB Community Symbol MISC \N \N
212 VB_External_Description 1 NOVEL 1 0 50 VB External Description MISC \N \N
213 VB_RNA_Description 1 NOVEL 1 0 50 VB RNA Description MISC \N \N
214 VB_Community_Annotation 1 KNOWN 1 0 50 VB Community Annotation MISC \N \N
250 ImmunoDB 1 KNOWN 1 0 50 ImmunoDB MISC \N \N
300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 0 5 Briggsae Hybrid MISC \N \N
400 Celera_Gene 1 PRED 1 0 5 Celera gene MISC \N \N
410 Celera_Pep 1 PRED 1 0 5 Celera peptide MISC \N \N
420 Celera_Trans 1 PRED 1 0 5 Celera transcript MISC \N \N
600 DROS_ORTH 1 ORTH 1 0 5 DROS ORTH MISC \N \N
700 EMBL 1 KNOWNXREF 1 0 5 European Nucleotide Archive (was EMBL) MISC \N \N
701 EMBL_predicted 1 PRED 1 0 4 Predicted European Nucleotide Archive (was EMBL) MISC \N \N
800 flybase_gene_id 1 KNOWNXREF 1 0 5 Flybase Gene MISC \N \N
801 flybase_translation_id 1 KNOWNXREF 1 0 5 Flybase translation ID MISC \N \N
802 flybase_gff 1 KNOWNXREF 1 0 5 Flybase GFF MISC \N \N
803 flybase_polypeptide_id 1 KNOWNXREF 1 0 5 Flybase Polypeptide ID MISC \N \N
804 flybase_annotation_id 1 KNOWNXREF 1 0 5 Flybase Annotation ID MISC \N \N
805 flybase_symbol 1 KNOWNXREF 1 0 50 Flybase Symbol MISC \N \N
806 flybase_synonym 1 KNOWNXREF 1 0 5 Flybase Synonym MISC \N \N
807 flybase_name 1 KNOWNXREF 1 0 5 Flybase Name MISC \N \N
808 flybase_transcript_id 1 KNOWNXREF 1 0 5 Flybase transcript ID MISC \N \N
810 gadfly_gene_cgid 1 XREF 1 0 10 Gadfly gene CGID MISC \N \N
811 gadfly_transcript_cgid 1 XREF 1 0 10 Gadfly transcript CGID MISC \N \N
812 gadfly_translation_cgid 1 XREF 1 0 10 Gadfly translation CGID MISC \N \N
821 FlyBaseName_gene 1 KNOWN 1 0 5 FlyBaseName gene MISC \N \N
824 FlyBaseName_translation 1 KNOWN 1 0 5 FlyBaseName translation MISC \N \N
825 FlyBaseName_transcript 1 XREF 1 0 50 FlyBaseName transcript MISC \N \N
826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene MISC \N \N
827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript MISC \N \N
828 FlyBaseCGID_translation 1 XREF 1 0 50 FlyBaseCGID translation MISC \N \N
829 BioGRID 1 KNOWNXREF 1 0 5 BioGRID Interaction data, The General Repository for Interaction Datasets gene MISC \N \N
830 FlyExpress 1 KNOWNXREF 1 0 5 FlyExpress, expression patterns of developmentally relevant genes in Drosophila embryogenesis gene MISC \N \N
831 GenomeRNAi 1 KNOWNXREF 1 0 5 GenomeRNAi, a database for cell-based RNAi phenotypes gene MISC \N \N
832 InteractiveFly 1 KNOWNXREF 0 1 5 The Interactive Fly gene MISC \N \N
833 MitoDrome 1 KNOWNXREF 1 0 5 Nuclear genes encoding proteins targeted to the mitochondrion gene MISC \N \N
Richard Holland
committed
880 BDGP_insitu_expr 1 KNOWNXREF 1 0 5 Berkeley Drosophila Genome Project in situ Gene Expression Database (embryogenesis) MISC \N \N
882 FlyGrid 1 KNOWNXREF 1 0 5 FlyGRID Interaction Data, The General Repository for Interaction Datasets MISC \N \N
883 FlyReactome 1 KNOWNXREF 1 0 5 FlyReactome, a Curated Knowledgebase of Drosophila Melanogaster Pathways MISC \N \N
890 DEDb 1 KNOWNXREF 1 0 5 Drosophila melanogaster Exon Database MISC \N \N
900 GKB 1 XREF 1 0 5 GKB MISC \N \N
1000 GO 1 XREF 1 0 5 GO MISC \N \N
1100 HGNC 1 KNOWNXREF 1 1 100 HGNC Symbol PRIMARY_DB_SYNONYM \N \N
Andy Yates
committed
1200 Interpro 1 XREF 1 0 5 InterPro MISC \N \N
1300 EntrezGene 1 KNOWNXREF 1 0 10 EntrezGene MISC \N \N
1400 MGI 1 KNOWNXREF 1 1 50 MGI Symbol MISC \N \N
1500 MIM 1 KNOWNXREF 1 0 5 MIM MISC \N \N
1510 MIM_GENE 1 KNOWNXREF 1 0 5 MIM gene MISC \N \N
1520 MIM_MORBID 1 KNOWNXREF 1 0 5 MIM disease MISC \N \N
1600 PDB 1 KNOWNXREF 1 0 5 PDB MISC \N \N
1700 protein_id 1 KNOWNXREF 1 0 5 Protein ID MISC \N \N
1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID MISC \N \N
1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA MISC \N \N
1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted MISC \N \N
1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted MISC \N \N
1820 RefSeq_rna 1 KNOWN 1 0 24 RefSeq RNA MISC \N \N
1825 RefSeq_rna_predicted 1 PRED 1 0 14 RefSeq RNA predicted MISC \N \N
1830 RefSeq_genomic 1 KNOWN 1 0 23 RefSeq Genomic MISC \N \N
1900 Sanger_Hver1_2_1 1 XREF 1 0 5 Sanger Hver 121 MISC \N \N
1901 Sanger_Hver1_3_1 1 XREF 1 0 5 Sanger Hver 131 MISC \N \N
1902 SNGR_Hver 1 XREF 1 0 5 Sanger Hver MISC \N \N
1910 Sanger_Mver1_1_1 1 XREF 1 0 5 Sanger Hver 111 MISC \N \N
2000 Uniprot/SPTREMBL 1 KNOWN 1 0 20 UniProtKB/TrEMBL MISC \N \N
2001 Uniprot/SPTREMBL_predicted 1 PRED 1 0 15 Predicted UniProtKB/TrEMBL MISC \N \N
2010 prediction_SPTREMBL 1 XREF 1 1 10 Prediction UniProtKB/TrEMBL MISC \N \N
2100 Superfamily 1 KNOWNXREF 1 0 5 Superfamily MISC \N \N
2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot MISC \N \N
2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot MISC \N \N
2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant MISC \N \N
2250 UniProtKB_all 1 XREF 1 0 40 UniProtKB generic accession number (TrEMBL or SwissProt not differentiated) MISC \N \N
Ian Longden
committed
2300 Vega_gene 1 KNOWNXREF 1 0 5 Vega gene MISC \N \N
2305 Vega_gene_like 1 XREF 1 0 5 Vega gene like MISC \N \N
2310 Vega_transcript 1 KNOWNXREF 1 0 5 Vega transcript MISC \N \N
2315 Vega_transcript_like 1 XREF 1 0 5 Vega transcript like MISC \N \N
2320 Vega_translation 1 KNOWNXREF 1 0 5 Vega translation MISC \N \N
2400 wormbase_gene 1 KNOWN 1 0 5 Wormbase Gene MISC \N \N
2410 wormbase_transcript 1 KNOWN 1 0 5 Wormbase Transcript MISC \N \N
2420 wormpep_id 1 KNOWN 1 0 5 Wormpep ID MISC \N \N
2430 wormbase_pseudogene 1 PSEUDO 1 0 5 Wormbase Pseudogene MISC \N \N
2440 wormbase_locus 1 KNOWN 1 0 5 Wormbase Locus MISC \N \N
2510 ZFIN_ID 1 KNOWNXREF 1 1 5 ZFIN PRIMARY_DB_SYNONYM \N \N
2530 ZFIN_xpat 1 KNOWNXREF 1 0 4 ZFIN expression patterns MISC \N \N
2600 GeneDB 1 KNOWN 1 0 5 GeneDB MISC \N \N
2601 cint_jgi_v1 1 KNOWN 1 0 10 JGI Gene ID (JGI 1.0) MISC \N \N
2602 cint_jgi_v2 1 KNOWN 1 0 5 JGI Gene ID (JGI 2.0) MISC \N \N
2610 cint_aniseed_v1 1 KNOWN 1 0 5 ANISEED (JGI 1.0) MISC \N \N
2611 cint_aniseed_v2 1 KNOWN 1 0 5 ANISEED (JGI 2.0) MISC \N \N
2700 Ens_Hs_gene 1 XREF 1 0 5 Ensembl Human Gene MISC \N \N
2710 Ens_Hs_transcript 1 XREF 1 0 5 Ensembl Human Transcript MISC \N \N
2720 Ens_Hs_translation 1 XREF 1 0 5 Ensembl Human Translation MISC \N \N
2800 RGD 1 KNOWNXREF 1 1 50 RGD Symbol MISC \N \N
2900 Genoscope_pred_gene 1 XREF 1 0 38 Genoscope pred gene MISC \N \N
2910 Genoscope_pred_transcript 1 XREF 1 0 39 Genoscope pred transcript MISC \N \N
2920 Genoscope_annotated_gene 1 KNOWN 1 0 40 Genoscope annotated gene MISC \N \N
2930 Genoscope_pred_translation 1 XREF 1 0 40 Genoscope pred translation MISC \N \N
2940 Genoscope_ann_transcript 1 KNOWN 1 0 40 Genoscope annotated transcript MISC \N \N
2950 Genoscope_ann_translation 1 KNOWN 1 0 40 Genoscope annotated translation MISC \N \N
3300 miRBase 1 KNOWNXREF 1 0 1 miRBase MISC \N \N
3310 miRBase_predicted 1 XREF 1 0 1 miRBase predicted MISC \N \N
3400 SGD 1 KNOWN 1 1 50 SGD MISC \N \N
3500 IPI 1 KNOWN 1 0 5 IPI MISC \N \N
3800 CCDS 1 KNOWN 1 0 50 CCDS MISC \N \N
3900 PUBMED 1 KNOWN 1 0 5 Sequence Publications LIT \N \N
4000 MEDLINE 1 KNOWN 1 0 5 MEDLINE LIT \N \N
4100 UniGene 1 KNOWN 1 0 5 UniGene MISC \N \N
4200 RFAM 1 XREF 1 0 5 RFAM MISC \N \N
4400 Xenopus_Jamboree 1 KNOWN 1 0 1 Jamboree MISC \N \N
4500 Tiffin 1 XREF 1 0 1 Tiffin DNA motifs MISC \N \N
4600 OTTG 1 XREF 1 0 1 Havana gene ALT_GENE \N \N
Julio Fernandez Banet
committed
4610 OTTT 1 XREF 1 0 1 Havana transcript ALT_TRANS \N \N
4620 OTTP 1 XREF 1 0 1 Havana translation MISC \N \N
4650 shares_CDS_with 1 XREF 1 0 1 transcript having same CDS ALT_TRANS \N \N
4660 shares_CDS_with_ENST 1 XREF 1 0 1 Imported HAVANA transcripts (Shares CDS with ENST) ALT_TRANS \N \N
4670 shares_CDS_with_OTTT 1 XREF 1 0 1 Havana transcript having same CDS ALT_TRANS \N \N
4680 shares_CDS_and_UTR_with_OTTT 1 XREF 1 0 1 Transcript having exact match between ENSEMBL and HAVANA ALT_TRANS \N \N
4700 Medaka 1 XREF 1 0 1 Medaka Genome Project MISC \N \N
4800 ENST 1 XREF 1 0 1 Ensembl transcript having exact match with Havana ALT_TRANS \N \N
4810 ENST_ident 1 XREF 1 0 1 Ensembl transcript having exact match with Havana ALT_TRANS \N \N
4820 ENST_CDS 1 XREF 1 0 1 Ensembl transcript sharing CDS with Havana ALT_TRANS \N \N
4900 TCAG 1 KNOWN 1 0 75 TCAG Chr 7 Annotation MISC \N \N
5000 Ens_Mm_gene 1 XREF 1 0 40 Ensembl Mouse Gene MISC \N \N
5010 Ens_Mm_transcript 1 XREF 1 0 40 Ensembl Mouse Transcript MISC \N \N
5020 Ens_Mm_translation 1 XREF 1 0 40 Ensembl Mouse Translation MISC \N \N
5100 IMGT_HLA 1 KNOWN 1 0 7 IMGT/HLA MISC \N \N
5200 Oxford_FGU_Md_gene 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions gene id ALT_TRANS \N \N
5300 Oxford_FGU_Md_tscript 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions transcript id ALT_TRANS \N \N
5400 Oxford_FGU_Oa_gene 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions gene id ALT_TRANS \N \N
5500 Oxford_FGU_Oa_tscript 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions transcript id ALT_TRANS \N \N
5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene MISC \N \N
5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript MISC \N \N
5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation MISC \N \N
5800 Ens_Dr_gene 1 XREF 1 0 5 Ensembl Zebrafish Gene MISC \N \N
5810 Ens_Dr_transcript 1 XREF 1 0 5 Ensembl Zebrafish Transcript MISC \N \N
5820 Ens_Dr_translation 1 XREF 1 0 5 Ensembl Zebrafish Translation MISC \N \N
5900 Ens_Md_gene 1 XREF 1 0 5 Ensembl Monodelphis Gene MISC \N \N
5901 Ens_Md_transcript 1 XREF 1 0 5 Ensembl Monodelphis Transcript MISC \N \N
6100 Havana_gene 1 XREF 1 0 100 Havana gene ID MISC \N \N
6200 Ens_Rn_gene 1 XREF 1 0 5 Ensembl Rat Gene MISC \N \N
6300 Ens_Ol_gene 1 XREF 1 0 5 Ensembl Medaka Gene MISC \N \N
6400 Ens_Gg_gene 1 XREF 1 0 40 Ensembl Chicken Gene MISC \N \N
6410 Ens_Gg_transcript 1 XREF 1 0 40 Ensembl Chicken Transcript MISC \N \N
6420 Ens_Gg_translation 1 XREF 1 0 40 Ensembl Chicken Translation MISC \N \N
6500 IMCB_Tr_gene 1 XREF 1 0 40 IMCB Fugu Gene MISC \N \N
6600 Ens_Ag_gene 1 XREF 1 0 5 Ensembl Mosquito Gene MISC \N \N
6630 Ens_Am_gene 1 XREF 1 0 5 Ensembl Bee Gene MISC \N \N
6660 Ens_Ce_gene 1 XREF 1 0 5 Ensembl Worm Gene MISC \N \N
6690 Ens_Dm_gene 1 XREF 1 0 5 Ensembl FruitFly Gene MISC \N \N
6720 Ens_Fr_gene 1 XREF 1 0 5 Ensembl Fugu Gene MISC \N \N
6750 Ens_Pt_gene 1 XREF 1 0 5 Ensembl Chimpanzee Gene MISC \N \N
6810 Ens_Tn_gene 1 XREF 1 0 5 Ensembl PufferFish Gene MISC \N \N
6820 Ens_Tr_transcript 1 XREF 1 0 40 Ensembl Fugu Transcript MISC \N \N
Martin Hammond
committed
7120 Ens_Aa_translation 1 XREF 1 0 40 Ensembl Aedes Translation MISC \N \N
7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank MISC \N \N
7160 Aedes_ManualAnnotation 1 KNOWN 1 0 30 Aedes ManualAnnotation MISC \N \N
7170 Ixodes_ManualAnnotation 1 KNOWN 1 0 30 Ixodes ManualAnnotation MISC \N \N
7180 VB_Community_Annotation 1 KNOWN 1 0 30 VB Community Annotation MISC \N \N
7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB MISC \N \N
7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB MISC \N \N
8000 Vega_mouse_transcript 1 XREF 1 0 5 Vega mouse transcript MISC \N \N
8100 Platypus_olfactory_receptor 1 XREF 1 0 40 Platypus olfactory receptor gene MISC \N \N
8200 PRF 1 XREF 1 0 5 PRF MISC \N \N
8300 PIR 1 XREF 1 0 5 PIR MISC \N \N
8400 TetNig_cdna 1 XREF 1 0 40 Genoscope tetraodon cDNA MISC \N \N
8500 GasAcu_cdna 1 XREF 1 0 40 Stickleback cDNA MISC \N \N
8600 OrnAna_454_cdna 1 XREF 1 0 40 Platypus 454 cDNA MISC \N \N
8700 TakRub_cdna 1 XREF 1 0 40 Takifugu cDNA MISC \N \N
8800 CioInt_est 1 XREF 1 0 40 Ciona intestinalis EST MISC \N \N
8900 CioInt_cdna 1 XREF 1 0 40 Ciona intestinalis cDNA MISC \N \N
9000 CaeEle_est 1 XREF 1 0 40 C Elegans EST MISC \N \N
9100 XenTro_Gurdon_EST 1 XREF 1 0 40 Xenopus Gurdon EST Clusters MISC \N \N
9110 XenTro_cdna 1 XREF 1 0 40 Xenopus Tropicalis cDNA MISC \N \N
9120 XenLae_cdna 1 XREF 1 0 40 Xenopus Laevis cDNA MISC \N \N
9200 TakRub_est 1 XREF 1 0 40 Takifugu EST MISC \N \N
9210 TakRub_annotation 1 XREF 1 0 40 Takifugu gene annotation MISC \N \N
9220 TakRub_seleno_annotation 1 XREF 1 0 40 Takifugu selenoprotein annotation MISC \N \N
9400 TetNig_mouse_econtig 1 XREF 1 0 40 Genoscope mouse exofish econtig MISC \N \N
9410 TetNig_fugu_econtig 1 XREF 1 0 40 Genoscope fugu exofish econtig MISC \N \N
9420 TetNig_human_econtig 1 XREF 1 0 40 Genoscope human exofish econtig MISC \N \N
9430 TetNig_human_IPI_econtig 1 XREF 1 0 40 Genoscope human IPI exofish econtig MISC \N \N
9440 TetNig_mouse_IPI_econtig 1 XREF 1 0 40 Genoscope mouse IPI exofish econtig MISC \N \N
9450 TetNig_rat_econtig 1 XREF 1 0 40 Genoscope rat exofish econtig MISC \N \N
9460 TetNig_chick_econtig 1 XREF 1 0 40 Genoscope chicken exofish econtig MISC \N \N
9500 OryLat_est 1 XREF 1 0 40 Medaka EST MISC \N \N
9600 Trace_archive 1 XREF 1 0 40 Trace Archive id MISC \N \N
9700 CioSav_est 1 XREF 1 0 40 Ciona savignyi EST MISC \N \N
9800 kyotograil_2004 1 PRED 1 0 30 Ciona intestinalis Kyotograil 2004 predictions MISC \N \N
9900 kyotograil_2005 1 PRED 1 0 30 Ciona intestinalis Kyotograil 2005 predictions MISC \N \N
10000 wormbase_id 1 XREF 1 0 30 Generic exdb for worbase id of any type for feature table MISC \N \N
10100 EPD 1 KNOWNXREF 1 0 5 Eukaryotic Promoter Database (Bucher) MISC \N \N
10200 GPCR 1 KNOWNXREF 1 0 5 The G protein-coupled receptor database MISC \N \N
10300 MEROPS 1 KNOWNXREF 1 0 5 MEROPS - the Peptidase Database MISC \N \N
10500 TransFac 1 KNOWNXREF 1 0 5 TransFac, database of transcription factors and their binding sites MISC \N \N
10600 modCB_gene 1 KNOWNXREF 1 0 5 Caenorhabditis briggsae, InParanoid model organism database MISC \N \N
10700 modCE_gene 1 KNOWNXREF 1 0 5 Caenorhabditis elegans, InParanoid model organism database MISC \N \N
10800 modDD_gene 1 KNOWNXREF 1 0 5 Dictyostelium discoideum, InParanoid model organism database MISC \N \N
10900 GI 1 XREF 1 0 5 GenInfo Identifier, a sequence identification number for a nucleotide sequence MISC \N \N
11000 UCSC 1 KNOWNXREF 1 0 100 UCSC Stable ID MISC \N \N
11100 Culex_ncRNA 1 XREF 1 0 70 Culex ncRNAs MISC \N \N
12300 HGNC_curated_gene 1 KNOWNXREF 1 0 5 HGNC (curated) MISC \N \N
12305 HGNC_automatic_gene 1 KNOWNXREF 1 0 5 HGNC (automatic) MISC \N \N
12310 Clone_based_vega_gene 1 KNOWNXREF 1 0 5 Clone-based (Vega) MISC \N \N
12315 Clone_based_ensembl_gene 1 XREF 1 0 5 Clone-based (Ensembl) MISC \N \N
12400 HGNC_curated_transcript 1 KNOWNXREF 1 0 5 HGNC (curated) MISC \N \N
12405 HGNC_automatic_transcript 1 KNOWNXREF 1 0 5 HGNC (automatic) MISC \N \N
12410 Clone_based_vega_transcript 1 KNOWNXREF 1 0 5 Clone-based (Vega) MISC \N \N
12415 Clone_based_ensembl_transcript 1 XREF 1 0 5 Clone-based (Ensembl) MISC \N \N
12500 DBASS3 1 XREF 1 0 50 DataBase of Aberrant 3' Splice Sites MISC \N \N
12505 DBASS5 1 XREF 1 0 50 DataBase of Aberrant 5' Splice Sites MISC \N \N
12510 HPA 1 XREF 1 0 50 Human Protein Atlas MISC \N \N
12550 MGI_curated_gene 1 KNOWNXREF 1 0 5 MGI (curated) MISC \N \N
12555 MGI_automatic_gene 1 KNOWNXREF 1 0 5 MGI (automatic) MISC \N \N
12560 MGI_curated_transcript 1 KNOWNXREF 1 0 5 MGI (curated) MISC \N \N
12565 MGI_automatic_transcript 1 KNOWNXREF 1 0 5 MGI (automatic) MISC \N \N
12601 Tgut_symbol 1 KNOWNXREF 0 0 100 Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK PRIMARY_DB_SYNONYM \N \N
12610 Fantom 1 XREF 0 1 50 Fantom MISC \N \N
12620 Duck_consortium 1 XREF 0 0 0 Duck consortium MISC \N \N
12630 BGI_duck_transcriptome 1 XREF 0 0 0 Beijing Genomics Institute (BGI) duck transcriptome MISC \N \N
Andreas Kusalananda Kähäri
committed
12700 goslim_goa 1 XREF 1 0 5 GOSlim GOA MISC \N \N
12710 WTSI_gorilla_transcriptome 1 XREF 0 0 0 Wellcome Trust Sanger Institute (WTSI) gorilla transcriptome MISC \N \N
12720 WTSI_zebrafish_transcriptome 1 XREF 0 0 0 Wellcome Trust Sanger Institute (WTSI) zebrafish transcriptome MISC \N \N
# Ensembl Genomes external dbs
20005 UniParc 1 KNOWNXREF 1 \N \N UniParc PRIMARY_DB_SYNONYM \N \N \N
20008 BRENDA 1 KNOWNXREF 1 \N \N BRENDA PRIMARY_DB_SYNONYM \N \N \N
20009 BioCyc 1 KNOWNXREF 1 \N \N BioCyc PRIMARY_DB_SYNONYM \N \N \N
20010 BuruList 1 KNOWNXREF 1 \N \N BuruList PRIMARY_DB_SYNONYM \N \N \N
20013 EchoBASE 1 KNOWNXREF 1 \N \N EchoBASE PRIMARY_DB_SYNONYM \N \N \N
20014 EcoGene 1 KNOWNXREF 1 \N \N EcoGene PRIMARY_DB_SYNONYM \N \N \N
20017 GeneDB_Spombe 1 KNOWNXREF 1 \N \N GeneDB_Spombe PRIMARY_DB_SYNONYM \N \N \N
20025 Leproma 1 KNOWNXREF 1 \N \N Leproma PRIMARY_DB_SYNONYM \N \N \N
20031 2DBase_Ecoli 1 KNOWNXREF 1 \N \N 2DBase-Ecoli PRIMARY_DB_SYNONYM \N \N \N
20038 SagaList 1 KNOWNXREF 1 \N \N SagaList PRIMARY_DB_SYNONYM \N \N \N
20040 SubtiList 1 KNOWNXREF 1 \N \N SubtiList PRIMARY_DB_SYNONYM \N \N \N
20042 TIGR 1 KNOWNXREF 1 \N \N TIGR PRIMARY_DB_SYNONYM \N \N \N
20043 TubercuList 1 KNOWNXREF 1 \N \N TubercuList PRIMARY_DB_SYNONYM \N \N \N
20046 ArrayExpress 1 KNOWNXREF 1 \N \N ArrayExpress PRIMARY_DB_SYNONYM \N \N \N
20050 GermOnline 1 KNOWNXREF 1 \N \N GermOnline PRIMARY_DB_SYNONYM \N \N \N
20059 DIP 1 KNOWNXREF 1 \N \N DIP PRIMARY_DB_SYNONYM \N \N \N
20061 DisProt 1 KNOWNXREF 1 \N \N DisProt PRIMARY_DB_SYNONYM \N \N \N
20062 DrugBank 1 KNOWNXREF 1 \N \N DrugBank PRIMARY_DB_SYNONYM \N \N \N
20065 GlycoSuiteDB 1 KNOWNXREF 1 \N \N GlycoSuiteDB PRIMARY_DB_SYNONYM \N \N \N
20066 HAMAP 1 KNOWNXREF 1 \N \N HAMAP PRIMARY_DB_SYNONYM \N \N \N
20067 HOGENOM 1 KNOWNXREF 1 \N \N HOGENOM PRIMARY_DB_SYNONYM \N \N \N
20071 HSSP 1 KNOWNXREF 1 \N \N HSSP PRIMARY_DB_SYNONYM \N \N \N
20072 IntAct 1 KNOWNXREF 1 \N \N IntAct PRIMARY_DB_SYNONYM \N \N \N
20074 KEGG 1 KNOWNXREF 1 \N \N KEGG PRIMARY_DB_SYNONYM \N \N \N
20078 PDBsum 1 KNOWNXREF 1 \N \N PDBsum PRIMARY_DB_SYNONYM \N \N \N
20082 PeroxiBase 1 KNOWNXREF 1 \N \N PeroxiBase PRIMARY_DB_SYNONYM \N \N \N
20083 PhosSite 1 KNOWNXREF 1 \N \N PhosSite PRIMARY_DB_SYNONYM \N \N \N
20084 PptaseDB 1 KNOWNXREF 1 \N \N PptaseDB PRIMARY_DB_SYNONYM \N \N \N
20085 REBASE 1 KNOWNXREF 1 \N \N REBASE PRIMARY_DB_SYNONYM \N \N \N
20088 Reactome 1 KNOWNXREF 1 \N \N Reactome PRIMARY_DB_SYNONYM \N \N \N
20090 SWISS_2DPAGE 1 KNOWNXREF 1 \N \N SWISS-2DPAGE PRIMARY_DB_SYNONYM \N \N \N
20097 RegulonDb_Transcript 1 KNOWNXREF 1 \N \N RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20099 RegulonDb_Gene 1 KNOWNXREF 1 \N \N RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20101 IntEnz 1 KNOWNXREF 1 \N \N EnzymeCommission PRIMARY_DB_SYNONYM \N \N \N
20102 ArrayExpressExperiment 1 KNOWNXREF 1 \N \N ArrayExpressExperiment PRIMARY_DB_SYNONYM \N \N \N
Susan Fairley
committed
20200 EMBLBANK_GENE 1 KNOWNXREF \N \N \N European Nucleotide Archive PRIMARY_DB_SYNONYM \N \N \N
20201 GeneDB_SPombe_transcript 1 KNOWNXREF \N \N \N GeneDB_SPombe PRIMARY_DB_SYNONYM \N \N \N
20202 EBACTERIA_GENE 1 KNOWNXREF \N \N \N e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
20203 EBACTERIA_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
Susan Fairley
committed
20204 EPROTIST_GENE 1 KNOWNXREF \N \N \N e!Protists PRIMARY_DB_SYNONYM \N \N \N
20205 EPROTIST_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Protists PRIMARY_DB_SYNONYM \N \N \N
20207 EFUNGI_GENE 1 KNOWNXREF \N \N \N e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20208 EFUNGI_TRANSCRIPT 1 KNOWNXREF \N \N \N e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20209 EMBLBANK_TRANSCRIPT 1 KNOWNXREF \N \N \N European Nucleotide Archive PRIMARY_DB_SYNONYM \N \N \N
Susan Fairley
committed
20210 GeneDB_SPombe_gene 1 KNOWNXREF \N \N \N GeneDB_SPombe PRIMARY_DB_SYNONYM \N \N \N
20301 RNAMMER 1 KNOWNXREF 1 \N \N RNAmmer MISC \N \N \N
20302 TRNASCAN_SE 1 KNOWNXREF 1 \N \N tRNAScan-SE MISC \N \N \N
20303 dictyBase 1 KNOWNXREF 1 \N \N DictyBase PRIMARY_DB_SYNONYM \N \N \N
20304 dictyBase_gene 1 KNOWNXREF 1 \N \N DictyBase PRIMARY_DB_SYNONYM \N \N \N
20305 dictyBase_transcript 1 KNOWNXREF 1 \N \N DictyBase PRIMARY_DB_SYNONYM \N \N \N
Susan Fairley
committed
20306 ASPGD 1 KNOWNXREF 1 \N \N AspGD PRIMARY_DB_SYNONYM \N \N \N
20307 ASPGD_GENE 1 KNOWNXREF 1 \N \N AspGD PRIMARY_DB_SYNONYM \N \N \N
20308 ASPGD_TRANSCRIPT 1 KNOWNXREF 1 \N \N AspGD PRIMARY_DB_SYNONYM \N \N \N
Susan Fairley
committed
20309 CADRE 1 KNOWNXREF 1 \N \N CADRE PRIMARY_DB_SYNONYM \N \N \N
20310 CADRE_GENE 1 KNOWNXREF 1 \N \N CADRE PRIMARY_DB_SYNONYM \N \N \N
20311 CADRE_TRANSCRIPT 1 KNOWNXREF 1 \N \N CADRE PRIMARY_DB_SYNONYM \N \N \N
20312 SGD_GENE 1 KNOWNXREF 1 \N \N SGD PRIMARY_DB_SYNONYM \N \N \N
20313 SGD_TRANSCRIPT 1 KNOWNXREF 1 \N \N SGD PRIMARY_DB_SYNONYM \N \N \N
20214 phatr_jgi_v2_bd 1 KNOWNXREF 1 \N \N JGI ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20215 phatr_jgi_v2 1 KNOWNXREF 1 \N \N JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20216 phatr_jgi_v2_bd_gene 1 KNOWNXREF 1 \N \N JGI Gene ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20217 phatr_jgi_v2_gene 1 KNOWNXREF 1 \N \N JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20218 phatr_jgi_v2_bd_transcript 1 KNOWNXREF 1 \N \N JGI transcript ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20219 phatr_jgi_v2_transcript 1 KNOWNXREF 1 \N \N JGI transcript ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20220 thaps_jgi_v2_bd 1 KNOWNXREF 1 \N \N JGI ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20221 thaps_jgi_v2 1 KNOWNXREF 1 \N \N JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20222 thaps_jgi_v2_gene 1 KNOWNXREF 1 \N \N JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20223 thaps_jgi_v2_bd_gene 1 KNOWNXREF 1 \N \N JGI Gene ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20224 thaps_jgi_v2_gene 1 KNOWNXREF 1 \N \N JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20225 thaps_jgi_v2_bd_transcript 1 KNOWNXREF 1 \N \N JGI transcript ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N
20226 thaps_jgi_v2_transcript 1 KNOWNXREF 1 \N \N JGI transcript ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N
20227 Diatom_EST_Cluster 1 XREF 1 0 0 ENS EST Cluster (Diatom ESTDB) MISC \N \N
20228 CADRE_Afum_A1163 1 KNOWNXREF 1 \N \N CADRE PRIMARY_DB_SYNONYM \N \N \N
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
# Ensembl Plants/Gramene external dbs
50000 BGI_EST_Cluster 1 XREF 1 0 0 EST Cluster (BGI Indica) MISC \N \N
50005 EC_NUMBER 1 XREF 1 0 0 Enzyme EC Number MISC \N \N
50010 FSTs 1 XREF 1 0 0 Flanking Sequence Tag (FST) MISC \N \N
50015 gene_name 1 KNOWNXREF 1 0 0 Gene Name MISC \N \N
50020 Gramene_Pathway 1 XREF 1 0 0 Gramene Pathway MISC \N \N
50030 Gramene_GenesDB 1 KNOWNXREF 1 0 100 Gramene Curated Gene MISC \N \N
50035 Gramene_MarkersDB 1 XREF 1 0 0 Gramene MISC \N \N
50040 Gramene_MarkersDB_mRNA 1 XREF 1 0 0 GenBank mRNA (Gramene) MISC \N \N
50050 Gramene_MarkersDB_EST 1 XREF 1 0 0 GenBank EST (Gramene) MISC \N \N
50060 IRGSP_Gene 1 XREF 1 0 0 IRGSP/RAP Gene MISC \N \N
50065 KOME 1 KNOWNXREF 1 0 0 Full Length cDNA (KOME) MISC \N \N
50070 miRNA_Accession 1 XREF 1 0 0 miRNA miRBase accession MISC \N \N
50080 miRNA_Registry 1 XREF 1 0 1 miRNA Registry MISC \N \N
50090 NASC_GENE_ID 1 XREF 1 0 1 NASC Gene ID MISC \N \N
50100 NASC_TRANSCRIPT_ID 1 XREF 1 0 1 NASC Transcript ID MISC \N \N
50110 PlantGDB_PUT 1 XREF 1 0 1 PlantGDB Transcript MISC \N \N
50120 RAP_Gene 1 XREF 1 0 0 IRGSP/RAP Gene MISC \N \N
50130 siRNA_Sunkar 1 XREF 1 0 0 siRNA ID from Sunkar et. al. 2005 NAR 33(14):4443-54 MISC \N \N
50140 TIGR_LOCUS 1 XREF 0 1 1 MSU/TIGR Locus MISC \N \N
50150 TIGR_LOCUS_MODEL 1 XREF 0 1 0 MSU/TIGR Locus (Model) MISC \N \N
50160 TAIR_LOCUS 1 XREF 1 0 8 TAIR Locus MISC \N \N
50170 TAIR_LOCUS_MODEL 1 XREF 1 0 8 TAIR Locus (Model) MISC \N \N
50180 TIGR_GeneIndex 1 XREF 1 0 0 Gene Index MISC \N \N
50185 TO 1 XREF 1 0 0 Plant Trait Ontology MISC \N \N
50190 PO 1 XREF 1 0 0 Plant Structure Ontology MISC \N \N
50195 PO_to_gene 1 XREF 1 0 0 Plant Structure Ontology MISC \N \N
50196 GO_to_gene 1 XREF 1 0 0 Gene Ontology MISC \N \N
50200 GRO 1 XREF 1 0 0 Plant Growth Stage MISC \N \N
# Oligo Arrays
50510 AFFY_RICE 1 XREF 1 0 1 Affymx GeneChip Rice ARRAY \N \N
50520 AFFY_ATH1 1 XREF 1 0 1 Affymx GeneChip ATH1 ARRAY \N \N
50530 AFFY_Vitis_Vinifera 1 XREF 1 0 1 Affymx GeneChip Vitis vinifera ARRAY \N \N
50540 AFFY_Poplar 1 XREF 1 0 1 Affymx GeneChip Poplar ARRAY \N \N
# LRG external dbs
50541 LRG 1 KNOWN 1 0 10 Locus Reference Genomic MISC \N \N \N
50542 ENS_LRG_gene 1 KNOWN 1 0 10 LRG display in Ensembl MISC \N \N \N
50543 ENS_LRG_transcript 1 KNOWN 1 0 10 LRG display in Ensembl MISC \N \N \N
50600 IKMCs_KOs 1 XREF 1 0 10 International Knockout Mouse Consortium Knockouts MISC \N \N Mouse lines produced as part of a high throughput strategy by the International
50601 IKMCs_ES_cells_available 1 XREF 1 0 10 International Knockout Mouse Consortium Knockouts (ES cells available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International (ES cells available)
50602 IKMCs_Mice_available 1 XREF 1 0 10 International Knockout Mouse Consortium Knockouts (Mice available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International (Mice available)
50603 IKMCs_No_products_available_yet 1 XREF 1 0 10 International Knockout Mouse Consortium Knockouts (No products available yet) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International (No products available yet)
50604 IKMCs_Vector_available 1 XREF 1 0 10 International Knockout Mouse Consortium Knockouts (Vector available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (Vector available)
#
#
# Please separate fields in this file with TABS not spaces!
#