Changes to deal with connection to EBI mirror.

misc-scripts/xref_mapping/XrefParser/ArrayExpressParser.pm

@@ -103,13 +103,10 @@ sub run_script {
     print "Loading the Registry\n" if $verbose;
     $registry->load_registry_from_multiple_dbs( 
       {
-        '-host'    => 'ens-staging1',
+        '-host'    => 'mysql-ensembl-mirror.ebi.ac.uk',
+	'-port'    => 4240,
         '-user'    => 'ensro',
       },
-      {
-        '-host'     => 'ens-staging2',
-        '-user'     => 'ensro',
-      }
         );
     $gene_adaptor = $registry->get_adaptor($species_name, 'core', 'Gene');
   } elsif ($project eq 'ensemblgenomes') {

misc-scripts/xref_mapping/XrefParser/CoreXrefParser.pm

@@ -71,13 +71,10 @@ sub run_script {
   if ($project eq 'ensembl') {
       $registry->load_registry_from_multiple_dbs( 
 	  {
-	      '-host'    => 'ens-staging1',
+	      '-host'    => 'mysql-ensembl-mirror.ebi.ac.uk',
+	      '-port'    => 4240,
 	      '-user'    => 'ensro',
 	  },
-	  {
-	      '-host'     => 'ens-staging2',
-	      '-user'     => 'ensro',
-	  },
        );
   } elsif ($project eq 'ensemblgenomes') {
 

misc-scripts/xref_mapping/XrefParser/InterproFromCoreParser.pm

@@ -50,11 +50,8 @@ sub run_script {
   if ($project eq 'ensembl') {
     $registry->load_registry_from_multiple_dbs(
       {
-        '-host' => 'ens-staging1',
-        '-user' => 'ensro',
-      },
-      {
-        '-host' => 'ens-staging2',
+        '-host' => 'mysql-ensembl-mirror.ebi.ac.uk',
+	'-port'    => 4240,
         '-user' => 'ensro',
       },
     );

misc-scripts/xref_mapping/XrefParser/RFAMParser.pm

@@ -88,13 +88,10 @@ sub run_script {
   } else {
       $registry->load_registry_from_multiple_dbs( 
       {
-        '-host'    => 'ens-staging1',
+        '-host'    => 'mysql-ensembl-mirror.ebi.ac.uk',
+	'-port'    => 4240,
         '-user'    => 'ensro',
       },
-      {
-        '-host'     => 'ens-staging2',
-        '-user'     => 'ensro',
-      },
       );
       $dba = $registry->get_DBAdaptor($species_name, 'core');
   }

misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm

@@ -138,13 +138,10 @@ sub run_script {
 # Else, database should be on staging
       $registry->load_registry_from_multiple_dbs(
           {
-              -host    => 'ens-staging1',
+              -host    => 'mysql-ensembl-mirror.ebi.ac.uk',
+	      '-port'    => 4240,
               -user    => 'ensro',
           },
-          {
-              -host     => 'ens-staging2',
-              -user     => 'ensro',
-          },
        );
       $core_dba = $registry->get_DBAdaptor($species_name,'core');
       }
@@ -163,13 +160,10 @@ sub run_script {
 # Else database should be on staging
       $registry->load_registry_from_multiple_dbs( 
 	  {
-	      -host    => 'ens-staging1',
+	      -host    => 'mysql-ensembl-mirror.ebi.ac.uk',
+	      '-port'    => 4240,
 	      -user    => 'ensro',
 	  },
-	  {
-	      -host     => 'ens-staging2',
-	      -user     => 'ensro',
-	  },
        );
       $otherf_dba = $registry->get_DBAdaptor($species_name, 'otherfeatures') if !defined($ofhost);
       if (defined $otherf_dba) { $otherf_dba->dnadb($core_dba); }