Alessandro Vullo authored 8 years ago and Magali Ruffier committed 8 years ago

Necessary not to set version to accession. The former should be integer and the latter is an alphanumerical string.
Newest MySQL version enforce the constraint and raise error 1366 (invalid integer value).
If the entry does not have a version, it will automatically default to 0.

Updated documentation for map_coordinates - ENSCORESW-2089

Enscoresw 1971 transl_table qualifier added to genbank and embl flat file dumps

Added abstract method _tables implementation to TranslationAdaptor as…

Updates to add projection parent as attributes in gtf and gff dumps -…

Further updates to include transl_table in flat files - changed method call to _get_codon_table_id - ENSCORESW-1971

For MySQL version 5.6 and above,  FLUSH TABLES is not permitted when there is an active READ LOCK. Added new code to run a FLUSH WITH READ LOCK for MySQL version 5.6 and above

Updates to include projection parent id in GTF dumps - attribute code…

Added abstract method _tables implementation to TranslationAdaptor as needed by generic_count in BaseAdaptor - ENSCORESW-1995

added multi-species database support

Updates to include projection parent id in GTF dumps - attribute codes proj_parent_g, proj_parent_t added to the dumps if available - ENSCORESW-2003

Fixed bug in set_gene_descriptions where filtered descriptions were b…

Enscoresw 1844 - allow SliceAdaptor to consider negative coordinates, as well as open-ended ranges

Updated documentation in POD for the routine parse_location_to_values - Further updates to ENSCORESW-1844

Feature/searchbyontologylinkage

Enscoresw 1481 - allow mapper to return original coordinates as well as mapped coordinates in the result