Commits · 01f70957dcb58437b1f50a91e42986bfc9b9f465 · ensembl-gh-mirror / ensembl

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Dec 09, 2008
- additional rules for c. elegans added · 01f70957
  Stefan Graef authored 16 years ago
  
  01f70957
Dec 08, 2008
- Remove double 'my' from js5 hack code. · 7f74d604
  Andreas Kusalananda Kähäri authored 16 years ago
  
  7f74d604
- and more tweaks · 91a49392
  Steve Trevanion authored 16 years ago
  
  91a49392
Dec 06, 2008
- *** empty log message *** · fdc24f53
  Steve Trevanion authored 16 years ago
  
  fdc24f53
Dec 05, 2008
- additional rules added · f323f563
  Stefan Graef authored 16 years ago
  
  f323f563
- more tweaks · a4a486c4
  Steve Trevanion authored 16 years ago
  
  a4a486c4
- further checks added · e96f6630
  Stefan Graef authored 16 years ago
  
  e96f6630
- - reads now also reference file to decide about updates · 701ffd0d
  Stefan Graef authored 16 years ago
```
- can be run also by db only
```
  701ffd0d
Dec 04, 2008
- fixed typos · 41a72834
  Stefan Graef authored 16 years ago
  
  41a72834
Dec 03, 2008
- script to update analysis displayable and display_label according to a given set of rules · e3a33325
  Stefan Graef authored 16 years ago
  
  e3a33325
Dec 02, 2008
- Quoted the mysql password so that it is shell-safe · 5c1cc9a5
  Will Spooner authored 16 years ago
  
  5c1cc9a5
- updtaed to support new web_data column · 7b7d27da
  Stefan Graef authored 16 years ago
  
  7b7d27da
- Formatting of comment. · 59ecd8fa
  Andreas Kusalananda Kähäri authored 16 years ago
  
  59ecd8fa
- fixes to code which saves features from user upload... add hack to update meta_coord table · 440a210a
  Web Admin authored 16 years ago
  
  440a210a
- warn -> warning so can be trapped! · 1cfabb9e
  Web Admin authored 16 years ago
  
  1cfabb9e
- use Terse no need to remove $VAR1 · e407bd8a
  Web Admin authored 16 years ago
  
  e407bd8a
- remove shouts · bf3799f4
  Web Admin authored 16 years ago
  
  bf3799f4
- Formatting. · 6686372c
  Andreas Kusalananda Kähäri authored 16 years ago
  
  6686372c
Dec 01, 2008
- added entries for non-displayable entries · ea67d4f0
  Steve Trevanion authored 16 years ago
  
  ea67d4f0
Nov 26, 2008
- vega specific changes · 6562f3f0
  Steve Trevanion authored 16 years ago
  
  6562f3f0
- Corrected parsing of the names of the single species core databases from · 221e14bd
  Andreas Kusalananda Kähäri authored 16 years ago
```
the Ensembl Genomes project.

Formatting.
```
  221e14bd
- WikiGene added · 1a88db2b
  Ian Longden authored 16 years ago
  
  1a88db2b
Nov 25, 2008
- new file for e52 fingers crossed! · ae37c2bb
  Steve Trevanion authored 16 years ago
  
  ae37c2bb
- In new(), call Bio::EnsEMBL::Utils::ConfigRegistry::gen_load($self) · 24a9fdd8
  Andreas Kusalananda Kähäri authored 16 years ago
```
earlier.
```
  24a9fdd8
- Skip projection of genes from sources with "clone" in the db name - should... · e730db28
  Glenn Proctor authored 16 years ago
```
Skip projection of genes from sources with "clone" in the db name - should stop mouse clone names being projected to rat & kangaroo rat.
```
  e730db28
Nov 24, 2008
- applied patch to remove warning when get_all_VariationFeatures called with no arguments · 146ef511
  Daniel Rios authored 16 years ago
  
  146ef511
Nov 21, 2008
- problems if ccds has greater priority than havana so change back · b744cc9c
  Ian Longden authored 16 years ago
  
  b744cc9c
Nov 20, 2008
- Adding entry for the Ixodes_ManualAnnotation file · dcd6353c
  Karyn Megy authored 16 years ago
  
  dcd6353c
Nov 18, 2008

make sure if we use clone name for the gene name that we only get each clone... · c7b20b23

Ian Longden authored 16 years ago

make sure if we use clone name for the gene name that we only get each clone anem once, else add -201 at the end and increment for each one.

c7b20b23

Nov 17, 2008
- new vega types · 94c242fa
  Steve Trevanion authored 16 years ago
  
  94c242fa
- Change one occurrence of filter_biotype() into filter_biotypes(). · 7316d594
  Andreas Kusalananda Kähäri authored 16 years ago
  
  7316d594
Nov 14, 2008

remove_DBAdaptor now handles absent adaptors nicely · d0ae209d

Nathan Johnson authored 16 years ago

reset_DBADaptor also handles absent adaptor nicely, as well as an extra parameters hash for passing to the DBAdaptor constructor

d0ae209d

Nov 13, 2008
- Corrected command-line for healthchecks. · 20e81b86
  Glenn Proctor authored 16 years ago
  
  20e81b86
- Make table used in GO xref clean up a TEMPORARY table. · 1e20e7a6
  Glenn Proctor authored 16 years ago
  
  1e20e7a6
- Only clean up GO terms if GO term projection has been run. · de14f15a
  Glenn Proctor authored 16 years ago
  
  de14f15a
Nov 12, 2008
- added MGI_curated_gene and MGI_curated_transcript to list for display_xref etc · 258045e9
  Ian Longden authored 16 years ago
  
  258045e9
- official name moved to basic mapper to be used by mouse etc so not needed here now. · a36850f4
  Ian Longden authored 16 years ago
  
  a36850f4
- lots, not very useful i know but too many diffs to sort out, but it works now · fcab8d20
  Ian Longden authored 16 years ago
  
  fcab8d20
- config changes · d269e438
  Ian Longden authored 16 years ago
  
  d269e438
- commented out debug stuff · 0079a383
  Ian Longden authored 16 years ago
  
  0079a383