Commits · 1dc556d3d0ae0261a87b6dfd42d976d7b7210c9d · ensembl-gh-mirror / ensembl

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Jan 11, 2012
- override SubmitMapper get_set_lists method · 1dc556d3
  Monika Komorowska authored 13 years ago
  
  1dc556d3
- get_set_lists specific to species · 70ded237
  Monika Komorowska authored 13 years ago
  
  70ded237
- added comment when source_id is not found · efbd71eb
  Monika Komorowska authored 13 years ago
  
  efbd71eb
- Got my names muddled up · f9bb2d57
  Andy Yates authored 13 years ago
  
  f9bb2d57
- Data dir is always set so we need to override if given a target location. Also... · 2070d15c
  Andy Yates authored 13 years ago
```
Data dir is always set so we need to override if given a target location. Also formatting changes applied
```
  2070d15c
- Adding an option to specify a non standard tmp location · cc7ba66d
  Andy Yates authored 13 years ago
  
  cc7ba66d
- Missed a space · fd9f4634
  Andy Yates authored 13 years ago
  
  fd9f4634
- Apparently elements were a hash and not a string · 61c75d3f
  Andy Yates authored 13 years ago
  
  61c75d3f
- Bug · be81a8c7
  Andy Yates authored 13 years ago
  
  be81a8c7
- Adding a check to warn a user if the applied patches for the current version are equal · 90a3341e
  Andy Yates authored 13 years ago
  
  90a3341e
- Only hint about fixing if it was latest version and type was what was wanted. · 9e0241c7
  Andy Yates authored 13 years ago
  
  9e0241c7
- Trying to get the error messages to dissapear · 601a5938
  Andy Yates authored 13 years ago
  
  601a5938
- Adding a bit more chatter to the script · 97bab4f4
  Andy Yates authored 13 years ago
  
  97bab4f4
Jan 10, 2012
- updated sql statements to select features on the appropriate chromosome · 92c28685
  Monika Komorowska authored 13 years ago
  
  92c28685
- sample config file for script test_assembly_mapping.pl · f015463b
  Monika Komorowska authored 13 years ago
  
  f015463b
- sample config file for script load_feature_mappings.pl · 601158d4
  Monika Komorowska authored 13 years ago
  
  601158d4
- produce stats on the quality of feature mapping between two assemblies · bde1975e
  Monika Komorowska authored 13 years ago
  
  bde1975e
- load feature location in old db, new db and feature mapping between two assemblies · 8621c257
  Monika Komorowska authored 13 years ago
  
  8621c257
- Update year to 2012 · b57dba73
  Andy Yates authored 13 years ago
  
  b57dba73
- Adding in a script to make the yearly copyright notification update a bit easier · 8ba0a8a9
  Andy Yates authored 13 years ago
  
  8ba0a8a9
- now catches schema versions as empty strings · 13973885
  Nathan Johnson authored 13 years ago
  
  13973885
- Added specific code for Scer for parsing the EC number from the description line · 6d0eae0f
  Arnaud Kerhornou authored 13 years ago
  
  6d0eae0f
- Attach SGD GO mapping to translation objects · b27c80b7
  Arnaud Kerhornou authored 13 years ago
  
  b27c80b7
- Attach SGD mapping to translation object rather than transcript objects, so GO... · 086f1662
  Arnaud Kerhornou authored 13 years ago
```
Attach SGD mapping to translation object rather than transcript objects, so GO mapping get also attach to translations. Commented STDERR statements;
```
  086f1662
- deleted misplaced croak statement · 45ff6411
  Monika Komorowska authored 13 years ago
  
  45ff6411
- Bug found meaning the specified target location was never used & the script would have broken · 0d9f6dc4
  Andy Yates authored 13 years ago
  
  0d9f6dc4
- Proxy for DBConnections. In to make sure code is not lost for the future · db48a526
  Andy Yates authored 13 years ago
  
  db48a526
- Deprecating get_Species() so tests need to be updated · 14614cc0
  Andy Yates authored 13 years ago
  
  14614cc0
- Deprecating get_Species() · f8b33d62
  Andy Yates authored 13 years ago
  
  f8b33d62
- Removing the use of get_Species() · a1e56929
  Andy Yates authored 13 years ago
  
  a1e56929
- Code used to create dynamic proxies · 4e1b93ea
  Andy Yates authored 13 years ago
  
  4e1b93ea
- added species cavia_porcellus · 282cd190
  Monika Komorowska authored 13 years ago
  
  282cd190
- More docs · 5a61bccc
  Andy Yates authored 13 years ago
  
  5a61bccc
- Adding a check to prevent unintentional dropping of mart tables · 6e791115
  Andy Yates authored 13 years ago
  
  6e791115
- Removed usage of get_Species() · ed29b838
  Andy Yates authored 13 years ago
  
  ed29b838
- Removed as specified in release declarations · 2ce7ebc1
  Andy Yates authored 13 years ago
  
  2ce7ebc1
- updated readme · 2837f49c
  Andy Yates authored 13 years ago
  
  2837f49c
- Avoid the lines starting by a comment character (# or --) · b4df4f8e
  Laurent Gil authored 13 years ago
  
  b4df4f8e
- Adding support for mart temporary tables and making the documentation clearer · 13c281f6
  Andy Yates authored 13 years ago
  
  13c281f6
Jan 09, 2012

Giving this the option to specify the default location which should help when... · 54299532

Andy Yates authored 13 years ago

Giving this the option to specify the default location which should help when using these. Also switch to env perl and used warnings explicitly rather than rely on #! lines

54299532