added missing RefSeq sources for olive baboon

will parse refseq_import gene models and generate direct mappings to ensembl transcripts and translations,
based on overlapping coordinates

added sources RefSeq, RefSeq_mRNA and RefSeq_peptide for xrefs from refseq import in otherfeatures database
run for human and mouse

was initially added to table.sql, but not to patch_69_70_b.sql
checks if primary key exists and only adds it if it is missing

Extended support for different SQL backends through specific return values. See Michael Gray's efforts.

silly lsf has become very picky, so memory requirements need to be at the end of the block, and separated by a comma, not a colon
rusage[mem=1500:tmp=128] becomes rusage[tmp=128, mem=1500]

See JIRA ticket ENSCORESW-349

also save and restore operon_transcript_gene table
entries in the operon_transcript_gene table are not cleaned up

fix sent by mg13

updating the figure on how long it takes to run. The original estimate only took CPU time into account. This code does a lot in the DB so CPU usage is low

[ENSCORESW-335]. Allowed the input param force_species to populate species. Does using a hash. Higher up the levels we use a hash map plus decoding aliases so no need to worry about clashes between common and scientific names

[ENSCORESW-334]. EnsemblGenomes can also hand over species. Fixed the query to use an IN and bring EG in as well

commas though.

as first method has been removed in hive

always need to specify what type of object the attributes are being fetched for
use fetch_all_by_ method instead (fetch_all_by_Slice, fetch_all_by_Gene...)