GitLab

deprecate unused analysis descriptions.

Add new view unconnected_analyses that shows any analyses in
analysis_description that are not connected with analysis_web_data.

ensembl-pipeline/scripts instead.

use seq_region_start/end instead of start/end in sub  overlaps as the test should not be relative to the slices they are on

Updated UniProt_genename xref population code, now the ACCESSION attribute uses the UniProt accession number rather than the gene name

CCDS models from a DB instead of checking CCDS xrefs.

Also updated print statements

term.

# Demo program for the Ensembl ontology database and API.
#
# This program fetches a set of ontology terms by name and displays them
# on the console.
#-----------------------------------------------------------------------

Modified to deal with alt_scaffold_placement.txt ori=b, to process the files from GRC (skipping previously loaded patches) and load the patches into the supercontig level of the assembly (as well as chromosome and contig) along with the chrom-supercontig and supercontig-chrom mappings.