Commits · 375bccae6ef20d6f9380c4d13c6ee2f42f29b0b1 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring failed 1 month ago.
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update 5 months ago.

Apr 24, 2012
- POD corrections · 375bccae
  Kieron Taylor authored 12 years ago
  
  375bccae
- FASTA dumper pipeline transfer from personal workspace. Consult the personal... · 6053497d
  Andy Yates authored 12 years ago
```
FASTA dumper pipeline transfer from personal workspace. Consult the personal kt7 workspace for more detailed development notes.
```
  6053497d
- Update test count because I am too lazy to update it to use Test::More · d2377aa2
  Kieron Taylor authored 12 years ago
  
  d2377aa2
- Copied fetch_all_by_biotype from GeneAdaptor to TranscriptAdaptor. · a85f6b1e
  Kieron Taylor authored 12 years ago
  
  a85f6b1e
Apr 23, 2012
- Added support for SEE ALSO and further cleaned up code and text samples prior... · f99c5816
  Kieron Taylor authored 12 years ago
```
Added support for SEE ALSO and further cleaned up code and text samples prior to doxygen processing.
```
  f99c5816
Apr 20, 2012
- POD corrections · 0bd42aee
  Kieron Taylor authored 12 years ago
  
  0bd42aee
- *** empty log message *** · f592a1fe
  Monika Komorowska authored 12 years ago
  
  f592a1fe
- correcting "End coord + 1 is less then start coord" error messages · e038494a
  Stephen Keenan authored 12 years ago
  
  e038494a
- API version up · b0ca23d3
  Andy Yates authored 12 years ago
  
  b0ca23d3
- Allowing the API call to fetch back terms which have a distance of 0 i.e.... · e47c80d5
  Andy Yates authored 12 years ago
```
Allowing the API call to fetch back terms which have a distance of 0 i.e. linked at the current level. This is to be used with caution
```
  e47c80d5
- POD corrections · 9f81aae8
  Kieron Taylor authored 12 years ago
  
  9f81aae8
- Allowing people to comment on web data · 8b6b2cb0
  Andy Yates authored 12 years ago
  
  8b6b2cb0
- Added the method "get_all_somatic_StructuralVariationFeatures" · 0a010596
  Laurent Gil authored 12 years ago
  
  0a010596
Apr 19, 2012
- Cleaned up overly escaped code examples. · 6e45cbeb
  Kieron Taylor authored 12 years ago
  
  6e45cbeb
- Spelling of environment corrected in POD. · 47addc4b
  Kieron Taylor authored 12 years ago
  
  47addc4b
Apr 18, 2012
- In initial_stable_id(): · 4e3fc21a
  Andreas Kusalananda Kähäri authored 12 years ago
```
  Do not try to use ${type}_stable_id tables that do not any longer exist.

  Reformat.
```
  4e3fc21a
- Really the user does not need to be able to do select into outfile. copy paste error · d2743a85
  Andy Yates authored 12 years ago
  
  d2743a85
- Append accession number to the display label. · 15e78dcf
  Monika Komorowska authored 12 years ago
```
JIRA ticket: http://www.ebi.ac.uk/panda/jira/browse/ENSCORESW-117
```
  15e78dcf
Apr 17, 2012
- Bug created and I didn't run the test cases. · f50b9edf
  Andy Yates authored 12 years ago
  
  f50b9edf
- Do not do meta_coord calculations for the ditag table. · 8ed32b19
  Andreas Kusalananda Kähäri authored 12 years ago
  
  8ed32b19
- Getter/setter for the header function · acf08a4a
  Andy Yates authored 12 years ago
  
  acf08a4a
Apr 16, 2012
- Added note about =head2 in DESCRIPTION section, and corrected a typo. · 3531f19b
  Kieron Taylor authored 12 years ago
  
  3531f19b
- Fixed some icky POD · 2b6aa319
  Kieron Taylor authored 12 years ago
  
  2b6aa319
- don't strip off the SSF prefix · 101e1369
  Monika Komorowska authored 12 years ago
  
  101e1369
Apr 13, 2012
- file format changed · c9f97ac6
  Monika Komorowska authored 12 years ago
  
  c9f97ac6
- updated MIM2GENE source url · 5f387491
  Monika Komorowska authored 12 years ago
  
  5f387491
- croaking when '--(db)host' isn't passed, adding -D to the list of options... · 5f8c3edd
  Dan Bolser authored 12 years ago
```
croaking when '--(db)host' isn't passed, adding -D to the list of options recognized for --dbname (after MySQL), improving readability of the dba_opts data structure
```
  5f8c3edd
Apr 12, 2012
- documentation updates · ebe7e3d0
  Monika Komorowska authored 12 years ago
  
  ebe7e3d0
Apr 11, 2012
- Supporting passing args into the Gzip layer · 8bd2dca5
  Andy Yates authored 12 years ago
  
  8bd2dca5
- store density features in batch · ca683575
  Monika Komorowska authored 12 years ago
  
  ca683575
- store density features in batch · 5cd7ec3b
  Monika Komorowska authored 12 years ago
  
  5cd7ec3b
- count only stored density features · 1fec175b
  Monika Komorowska authored 12 years ago
  
  1fec175b
- count only density features which have been stored · cde48eb3
  Monika Komorowska authored 12 years ago
  
  cde48eb3
- changed result title format as request by Paul/Dan S · 18a94c17
  Nick Langridge authored 12 years ago
  
  18a94c17
- make sure dbs flagged as having variation positions changed have a variation db · 9cd98113
  Monika Komorowska authored 12 years ago
  
  9cd98113
Apr 10, 2012
- Round number serialisation ok · c46f7c7e
  Andy Yates authored 12 years ago
  
  c46f7c7e
- Testing if avoiding formatted writer speeds up our serialiser · 21bde5c0
  Andy Yates authored 12 years ago
  
  21bde5c0
- Removed problematic (!defined $release_file) test. · 0efe34de
  Derek Wilson authored 12 years ago
  
  0efe34de
- Updates for VectorBase species · 6f5d29bb
  Derek Wilson authored 12 years ago
  
  6f5d29bb
- extended memory limit for exonerate jobs · d28b985f
  Monika Komorowska authored 12 years ago
  
  d28b985f