Commits · 47f9f5ca4f01f9638c950d0f4c423de312a202c2 · ensembl-gh-mirror / ensembl

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Nov 10, 2004
- Print header for xrefs as well. · 47f9f5ca
  Glenn Proctor authored 20 years ago
  
  47f9f5ca
- Avoid division-by-zero errors. · 0e5bde51
  Glenn Proctor authored 20 years ago
  
  0e5bde51
- small description fix for rna. · 03457c38
  Ian Longden authored 20 years ago
  
  03457c38
- label and desc wrong way aroundcvs up -dP · 14757508
  Ian Longden authored 20 years ago
  
  14757508
- small fix for parsing rna genbank · 91313ff5
  Ian Longden authored 20 years ago
  
  91313ff5
- refseq location changed. Plus the rna is now obtained and parsed in genbank format · 92de39c7
  Ian Longden authored 20 years ago
  
  92de39c7
- Added -useexistingmappings option · 8d275673
  Glenn Proctor authored 20 years ago
  
  8d275673
- table at the bottom of prot view now works with new snp api · 3af98d62
  Fiona Cunningham authored 20 years ago
  
  3af98d62
- Interpro parser. Different to the other parsers in two respects. 1) does not... · 028c3c0f
  Ian Longden authored 20 years ago
```
Interpro parser. Different to the other parsers in two respects. 1) does not create the dependent xrefs.   2) inserts data into a new table which stores the mapping from interpro to pfam.
```
  028c3c0f
- add_xref method added which will simply add an xref to the database · 80990ba1
  Ian Longden authored 20 years ago
  
  80990ba1
- added new table for interpro -> pfam info. Also added url source line for interpro · 6ca93ea9
  Ian Longden authored 20 years ago
  
  6ca93ea9
Nov 09, 2004
- - select-statement adapted to new schema · 01ea4d89
  Jan-hinnerk Vogel authored 20 years ago
  
  01ea4d89
- adapting this to work with variation database · 33448548
  Fiona Cunningham authored 20 years ago
  
  33448548
- removed debug messages · 05f8046f
  Ian Longden authored 20 years ago
  
  05f8046f
- add_to_xrefs changed to take description as well · caf79ffd
  Ian Longden authored 20 years ago
  
  caf79ffd
- NOT tested yet but put into cvs fro safe keeping · f2b39118
  Ian Longden authored 20 years ago
  
  f2b39118
- get_taxonomy_from_species_id method added · b9e5f2b2
  Ian Longden authored 20 years ago
  
  b9e5f2b2
- note MIM2 listed and not MIM fro now as i want to see the differences from the... · 43e475ee
  Ian Longden authored 20 years ago
```
note MIM2 listed and not MIM fro now as i want to see the differences from the two methods. Also Zebrafish .SPC not available yet but should be soonish
```
  43e475ee
- removed debug messages · 9846348f
  Ian Longden authored 20 years ago
  
  9846348f
- MIMParser. Uses HUGO matches to link MIM numbers to the correct accession codes/xref_ids · ac121349
  Ian Longden authored 20 years ago
  
  ac121349
Nov 08, 2004
- fixed fetch_all_by_feature_class bug · 78d8f673
  Steve Trevanion authored 20 years ago
  
  78d8f673
- · e4fcaf3d
  Jan-hinnerk Vogel authored 20 years ago
```
-description for drosophila-specific file added
```
  e4fcaf3d
- Added fetch_all_by_feature_class and feature_classes methods · d3bda824
  Will Spooner authored 20 years ago
  
  d3bda824
Nov 05, 2004
- works with registry · 136f37d8
  Steve Trevanion authored 20 years ago
  
  136f37d8
- typo fix · 0a6c0daa
  Ian Longden authored 20 years ago
  
  0a6c0daa
- set species_id to be the taxonomy, easier to in in the populate script · c421e8cd
  Ian Longden authored 20 years ago
  
  c421e8cd
- gunzip problem again (fixed) · 6c8282cc
  Ian Longden authored 20 years ago
  
  6c8282cc
- version now added to xref so that accession has no version info in it · 7ef13ad5
  Ian Longden authored 20 years ago
  
  7ef13ad5
Nov 04, 2004
- fixed last incorrect commit · 2505f2c2
  Steve Trevanion authored 20 years ago
  
  2505f2c2
- works with registry and can also dump one or more chromosomes · df45cfa0
  Steve Trevanion authored 20 years ago
  
  df45cfa0
- works with registry and can also dump one or more chromosomes · 37202884
  Steve Trevanion authored 20 years ago
  
  37202884
- copes with unusual schema for current_clone_info · a93252c9
  Steve Trevanion authored 20 years ago
  
  a93252c9
- add new directory to package etc and print stats at end · 2e0c0901
  Ian Longden authored 20 years ago
  
  2e0c0901
- force gunzip. · cf70aec5
  Ian Longden authored 20 years ago
  
  cf70aec5
- Modification to retrieval by synonym to cope with orphan marker_synonym->marker links in mouse. · 5e876921
  Glenn Proctor authored 20 years ago
```
fetch_by_dbID only warns (rather than throwing) if the dbID does not exist, and fetch_all_by_synonym only returns valid markers.
```
  5e876921
- bug fix for .gz files (introduced in last commit) · 1851438a
  Ian Longden authored 20 years ago
  
  1851438a
- use methods in BaseParser now instead of local · 4dab48e0
  Ian Longden authored 20 years ago
  
  4dab48e0
- package missed of a couple of calls, this added · 2f35ce4b
  Ian Longden authored 20 years ago
  
  2f35ce4b
- allow more than one file per parser · e1e19628
  Ian Longden authored 20 years ago
  
  e1e19628
Nov 03, 2004
- added new method to get LD values in a slice · 88553fea
  Daniel Rios authored 20 years ago
  
  88553fea