to display features from userdata db on a slice from core db we have to use slice adaptor from userdata db

ensembl-51'.

Sprout from master 2008-10-27 21:30:31 UTC Glenn Proctor <gp1@sanger.ac.uk> 'Reverted to 51 schema, patch not in yet'
Delete:
    misc-scripts/protein_match/process_pmach.pl
    sql/patch_51_52_a.sql
    sql/patch_51_52_b.sql
    sql/patch_51_52_c.sql
    sql/patch_51_52_d.sql

Modified $cs->equals to cope with DAS::CoordSystem

  When testing for existance of an object xref entry with
  linkage_annotation, treat NULLs as equals.

+ some formatting.

extra number (used by Ensembl Genomes) after the word "core", as in
"schizzosachromyces_pombe_core_0_51_1a".

Passes unit tests.

ignore_release arg added to gene store . It was set to 1 before but can now be passed, default is still set to 1

Removed empty line.

Removed trailing spaces.

tweaked AffyAlign
removed AlignAffyProbe & AlignAffy

firstEF added

description added for Uniprot_non_vertebrate