Commits · 55502b5e3bcec72117131752527e3e6dbc18f1f1 · ensembl-gh-mirror / ensembl

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Apr 04, 2008
- first set of initial checks; changed param dumppath to basedir · 55502b5e
  Patrick Meidl authored 16 years ago
  
  55502b5e
- changed LINUX86 to X86_64 lsf host type · ab711d25
  Patrick Meidl authored 16 years ago
  
  ab711d25
- minor fix · b5017e3a
  Patrick Meidl authored 16 years ago
  
  b5017e3a
- added drop table statements · 2b8552ff
  Patrick Meidl authored 16 years ago
  
  2b8552ff
- debug · 67d1afec
  Patrick Meidl authored 16 years ago
  
  67d1afec
- now can compare all entity types; much more in-depth comparison · 795451a8
  Patrick Meidl authored 16 years ago
  
  795451a8
- bug fix · 00a12692
  Patrick Meidl authored 16 years ago
  
  00a12692
- change to reflect Cache implementation changes · f0d7753e
  Patrick Meidl authored 16 years ago
  
  f0d7753e
- script to compare scores from two stable ID mapping runs · 0f5f78d2
  Patrick Meidl authored 16 years ago
  
  0f5f78d2
- script to run synteny rescoring in parallel on the farm · ec74ab6a
  Patrick Meidl authored 16 years ago
  
  ec74ab6a
- added default value support to user_proceed() · 4c291ef6
  Patrick Meidl authored 16 years ago
  
  4c291ef6
- debugging · d2ce116f
  Patrick Meidl authored 16 years ago
  
  d2ce116f
- proper length attribute · cde4ed87
  Patrick Meidl authored 16 years ago
  
  cde4ed87
- removed display_name attribute · b8ab9499
  Patrick Meidl authored 16 years ago
  
  b8ab9499
- bug fixes · 413d0d81
  Patrick Meidl authored 16 years ago
  
  413d0d81
- now isa Serialisable; added code to parallelise synteny rescoring · 94086e7b
  Patrick Meidl authored 16 years ago
  
  94086e7b
- more flexible handling of cache file name · a7f2db25
  Patrick Meidl authored 16 years ago
  
  a7f2db25
- added flush(), sub_matrix(), size() and log() methods · d567cb6e
  Patrick Meidl authored 16 years ago
  
  d567cb6e
- minor logging improvement · eb2253df
  Patrick Meidl authored 16 years ago
  
  eb2253df
- debug · c3c83292
  Patrick Meidl authored 16 years ago
  
  c3c83292
- bug fixes. run synteny assisted mappping in parallel · e2645d4f
  Patrick Meidl authored 16 years ago
  
  e2645d4f
- don't do display name disambiguation · d3a8445b
  Patrick Meidl authored 16 years ago
  
  d3a8445b
- mainly debug additions · b2675ee5
  Patrick Meidl authored 16 years ago
  
  b2675ee5
- minor improvements to to_string*() methods · d8083948
  Patrick Meidl authored 16 years ago
  
  d8083948
- changed internal implementation to store all cache types in one file (fixes... · b2e28a16
  Patrick Meidl authored 16 years ago
```
changed internal implementation to store all cache types in one file (fixes shared references issue with Storable and largely reduces memory consumption)
```
  b2e28a16
- added no_check_empty option to upload_file_into_table() · 90e38e4f
  Patrick Meidl authored 16 years ago
  
  90e38e4f
Apr 03, 2008
- Diable the 'index' and 'feature' binning methods. · d37670b6
  Andreas Kusalananda Kähäri authored 16 years ago
  
  d37670b6
- changes to vega gene types · 196ce149
  Steve Trevanion authored 16 years ago
  
  196ce149
- tweaks for new human Vega · 694b8b22
  Steve Trevanion authored 16 years ago
  
  694b8b22
Mar 26, 2008
- removed on branch-vega-48-dev · d038f9d4
  Steve Trevanion authored 17 years ago
  
  d038f9d4
- merge from vega-48-dev · f7ccac98
  Steve Trevanion authored 17 years ago
  
  f7ccac98
- merge from branch-vega-49 · b4cb20ed
  Steve Trevanion authored 17 years ago
  
  b4cb20ed
- *** empty log message *** · 854b2361
  Steve Trevanion authored 17 years ago
  
  854b2361
Mar 25, 2008
- white space merge (js5) · f766fb69
  Web Admin authored 17 years ago
  
  f766fb69
Mar 20, 2008
- das source can have multiple coordinate systems · 76355ef0
  Eugene Kulesha authored 17 years ago
  
  76355ef0
Mar 19, 2008
- Use a simple row cache and fetchall_arrayref() rather than · 062bad21
  Andreas Kusalananda Kähäri authored 17 years ago
```
fetchrow_arrayref() to speed up DB fetching by approx. 100 rows/sec.
```
  062bad21
Mar 18, 2008
- Beautification. · 827df26b
  Andreas Kusalananda Kähäri authored 17 years ago
  
  827df26b
- Make it easier to enable the timing code. Just comment out the · 68a0a08e
  Andreas Kusalananda Kähäri authored 17 years ago
```
'__END__'...
```
  68a0a08e
- In cache_toplevel_seq_mappings(): · 16e58a4f
  Andreas Kusalananda Kähäri authored 17 years ago
```
  Change SQL from 'code like "toplevel"' to 'code = "toplevel"'.

  Formatting
```
  16e58a4f
- resitricted -xref and -probe_mapping to core DBs · 3a0ae273
  Nathan Johnson authored 17 years ago
  
  3a0ae273