Commits · 6751b79ef16ac449ffa7f7a01cdd86b68661f010 · ensembl-gh-mirror / ensembl

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Jan 14, 2009
- query -> xref and target/translation -> ensembl in identity_xref table and sql · 6751b79e
  Ian Longden authored 16 years ago
  
  6751b79e
- Now includes changes for release 53. · 2927dc88
  Glenn Proctor authored 16 years ago
  
  2927dc88
- Remove the separate index on go_xref.object_xref as this is indexed in the UNIQUE constraint. · 7ac5a65a
  Glenn Proctor authored 16 years ago
  
  7ac5a65a
- Fixed title. · f7d783dc
  Glenn Proctor authored 16 years ago
  
  f7d783dc
- Add the enum value 'ENSEMBL' to the external_db.type column (primarily for eFG). · 24e4667e
  Glenn Proctor authored 16 years ago
  
  24e4667e
- Change versions in meta table. · 859375d9
  Glenn Proctor authored 16 years ago
  
  859375d9
Jan 07, 2009
- Moved error msg when attempting to map FROM toplevel - was being masked by a... · b3d23f4f
  Andrew Jenkinson authored 16 years ago
```
Moved error msg when attempting to map FROM toplevel - was being masked by a more cryptic error message.
```
  b3d23f4f
- *** empty log message *** · 8408c5dd
  Andreas Kusalananda Kähäri authored 16 years ago
  
  8408c5dd
- Minor update on doc for method "fetch_all_by_dbID_list" · 3302114f
  Amy Tang authored 16 years ago
  
  3302114f
Jan 06, 2009
- Properly formatted SYNOPSIS code, and removed syntax error. · b50c1062
  Andreas Kusalananda Kähäri authored 16 years ago
```
Updated list of allowed linkage types with list from the Ensembl Core
schema.

Updated rest of package code to conform to relatively common Core API
coding practices.
```
  b50c1062
- Added support for multiple input files · f5a593da
  Will Spooner authored 16 years ago
  
  f5a593da
Dec 18, 2008
- new xref mapping code. Added for safety and will not affect the old code yet · 86cc763f
  Ian Longden authored 16 years ago
  
  86cc763f
Dec 17, 2008
- Updated date to 2008 in LICENSE file · 2ab43b85
  Stephen Searle authored 16 years ago
  
  2ab43b85
Dec 13, 2008
- check database size and which tables are using the most -- mysql-specific · 349c651e
  Albert Vilella authored 16 years ago
  
  349c651e
Dec 11, 2008
- Add subclass of StableIdGenerator::EnsemblGeneric to do Aedes aegypti · af1fe1ae
  Andreas Kusalananda Kähäri authored 16 years ago
```
stable ID incrementation and verification.
```
  af1fe1ae
Dec 10, 2008
- Adding entry for Aedes Array ARRAY_LIV_AEGDETOX_0_25k_v2 · c11c7e73
  Karyn Megy authored 16 years ago
  
  c11c7e73
Dec 09, 2008
- how did I miss these earlier? · 08e5ea0a
  Steve Trevanion authored 16 years ago
  
  08e5ea0a
- additional rules for c. elegans added · 01f70957
  Stefan Graef authored 16 years ago
  
  01f70957
Dec 08, 2008
- Remove double 'my' from js5 hack code. · 7f74d604
  Andreas Kusalananda Kähäri authored 16 years ago
  
  7f74d604
- and more tweaks · 91a49392
  Steve Trevanion authored 16 years ago
  
  91a49392
Dec 06, 2008
- *** empty log message *** · fdc24f53
  Steve Trevanion authored 16 years ago
  
  fdc24f53
Dec 05, 2008
- additional rules added · f323f563
  Stefan Graef authored 16 years ago
  
  f323f563
- more tweaks · a4a486c4
  Steve Trevanion authored 16 years ago
  
  a4a486c4
- further checks added · e96f6630
  Stefan Graef authored 16 years ago
  
  e96f6630
- - reads now also reference file to decide about updates · 701ffd0d
  Stefan Graef authored 16 years ago
```
- can be run also by db only
```
  701ffd0d
Dec 04, 2008
- fixed typos · 41a72834
  Stefan Graef authored 16 years ago
  
  41a72834
Dec 03, 2008
- script to update analysis displayable and display_label according to a given set of rules · e3a33325
  Stefan Graef authored 16 years ago
  
  e3a33325
Dec 02, 2008
- Quoted the mysql password so that it is shell-safe · 5c1cc9a5
  Will Spooner authored 16 years ago
  
  5c1cc9a5
- updtaed to support new web_data column · 7b7d27da
  Stefan Graef authored 16 years ago
  
  7b7d27da
- Formatting of comment. · 59ecd8fa
  Andreas Kusalananda Kähäri authored 16 years ago
  
  59ecd8fa
- fixes to code which saves features from user upload... add hack to update meta_coord table · 440a210a
  Web Admin authored 16 years ago
  
  440a210a
- warn -> warning so can be trapped! · 1cfabb9e
  Web Admin authored 16 years ago
  
  1cfabb9e
- use Terse no need to remove $VAR1 · e407bd8a
  Web Admin authored 16 years ago
  
  e407bd8a
- remove shouts · bf3799f4
  Web Admin authored 16 years ago
  
  bf3799f4
- Formatting. · 6686372c
  Andreas Kusalananda Kähäri authored 16 years ago
  
  6686372c
Dec 01, 2008
- added entries for non-displayable entries · ea67d4f0
  Steve Trevanion authored 16 years ago
  
  ea67d4f0
Nov 26, 2008
- vega specific changes · 6562f3f0
  Steve Trevanion authored 16 years ago
  
  6562f3f0
- Corrected parsing of the names of the single species core databases from · 221e14bd
  Andreas Kusalananda Kähäri authored 16 years ago
```
the Ensembl Genomes project.

Formatting.
```
  221e14bd
- WikiGene added · 1a88db2b
  Ian Longden authored 16 years ago
  
  1a88db2b
Nov 25, 2008
- new file for e52 fingers crossed! · ae37c2bb
  Steve Trevanion authored 16 years ago
  
  ae37c2bb