This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git.
Pull mirroring failed .
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update .
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update .
- Nov 08, 2012
-
-
Thomas Maurel authored
Have changed the link for the SO.obo file from http://downloads.sourceforge.net/project/song/Sequence%20Ontology/so_2_5/so.obo2.5 to http://www.sequenceontology.org/resources/obo_files/current_release.obo. This will allow us to get the most up to date version.
-
http://www.ebi.ac.uk/efo/efo.oboThomas Maurel authored
to http://efo.svn.sourceforge.net/viewvc/efo/trunk/src/efoinobo/efo.obo. We are now getting the EFO.obo file from the head.
-
Andy Yates authored
SHIP IT! EFO now loads in without complaints from OBOParser. Also now handles duplication relations being inserted.
-
- Nov 07, 2012
-
-
Kieron Taylor authored
-
Kieron Taylor authored
-
Kieron Taylor authored
-
Kieron Taylor authored
-
Andy Yates authored
Added a truth test to see if the $term->{synonyms} reference was there. I'm assuming if it's there then it'll be an array
-
Andy Yates authored
Switched to Test::More and done_testing(). This should stop tests from failing due to poor test count specification.
-
- Nov 06, 2012
-
-
Andy Yates authored
-
Andy Yates authored
Make the verbose doc a bit more verbose. People in workshops could not find this method which points to poor documentation
-
Magali Ruffier authored
lrg code works if there are lrg xrefs there are lrg xrefs when the regular expression to fetch the data from hgnc is correct
-
Magali Ruffier authored
-
- Nov 05, 2012
-
-
Andy Yates authored
Added meta insert as otherwise any schema generated from this file would break when being patched. Also changed the ordering of the fields in protein_feature to avoid poor patch performance
-
Andy Yates authored
Test schema now matches live. Any future patching should be done using the ensembl-test/scripts/patch_test_databases.pl script.
-
Kieron Taylor authored
-
Andy Yates authored
use Test::More rather than old Test library. Avoids breaking tests when we change the numbers of tests run
-
Magali Ruffier authored
-
Dan Staines authored
-
Dan Staines authored
-
Dan Staines authored
-
Dan Staines authored
-
Dan Staines authored
-
Dan Staines authored
-
Dan Staines authored
-
Andy Yates authored
-
Dan Staines authored
-
Andy Yates authored
New patch which brings back the data_file's missing auto_increment declaration from patched databases. This does affect new databases created from the table.sql file.
-
- Nov 02, 2012
-
-
Andy Yates authored
[ENSCORESW-302]. TranslationAdaptor did not deal with multispecies databases properly when querying for IDs.
-
Kieron Taylor authored
-
Kieron Taylor authored
-
Kieron Taylor authored
Added missing parameter to allow secondary database password. Otherwise it defaults to none and fails.
-
Magali Ruffier authored
-
Magali Ruffier authored
-
- Nov 01, 2012
-
-
Dan Staines authored
-
Andy Yates authored
-
James Allen authored
-
James Allen authored
-
Andy Yates authored
[ENSCORESW-301]. Adding INSERT IGNORE to a lot of statements as EFO can repeat terms and subsets from other ontologies.
-
James Allen authored
-