Have changed the link for the SO.obo file from http://downloads.sourceforge.net/project/song/Sequence%20Ontology/so_2_5/so.obo2.5 to http://www.sequenceontology.org/resources/obo_files/current_release.obo. This will allow us to get the most up to date version.

 to http://efo.svn.sourceforge.net/viewvc/efo/trunk/src/efoinobo/efo.obo.
We are now getting the EFO.obo file from the head.

SHIP IT! EFO now loads in without complaints from OBOParser. Also now handles duplication relations being inserted.

Added a truth test to see if the $term->{synonyms} reference was there. I'm assuming if it's there then it'll be an array

[ENSCORESW-301]. Adding INSERT IGNORE to a lot of statements as EFO can repeat terms and subsets from other ontologies.

added distinct to select_sth sql - we can have multiple rows with the same child parent and relation_id since adding INTERSECTION tags

Storing 'intersection_of' lines for terms, storing relationships between terms not defined in the current ontology.

Ignoring terms referenced in intersection_of lines, until we redesign the db/ parsing script to be able to store them.

for 1.35 and above use OBO::Core::Ontology->subset_def_map()

# Demo program for the Ensembl ontology database and API.
#
# This program fetches a set of ontology terms by name and displays them
# on the console.
#-----------------------------------------------------------------------

Slight changes to output.

Also only get term definitions from within "...".

We assume we're running on fresh database.

scripts here.

OBO files.

ancestors within the YY subset (not just the closest one(s)).  Suggested
by Paul K.