Commits · 86bf89a649d036c250b12105b3e294482a53f9ef · ensembl-gh-mirror / ensembl

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Sep 27, 2011
- Don't delete the analysis and analysis description entries, update analysis creation date. · 06430119
  Monika Komorowska authored 13 years ago
  
  06430119
Sep 14, 2011

Commit moved to HEAD from branch-64. Moved the slice fetch into the... · 4b4ab262

Andy Yates authored 13 years ago

Commit moved to HEAD from branch-64. Moved the slice fetch into the knowngenedensity/genedensity loop so we can continue to use shift to iterate through them

4b4ab262

Jun 23, 2011
- Changes for submit_density_features.pl script · 43554d01
  Monika Komorowska authored 13 years ago
  
  43554d01
Mar 09, 2011
- Update analysis descriptions for 'genedensity' and 'knowngenedensity'. · 543d3e19
  Andreas Kusalananda Kähäri authored 14 years ago
  
  543d3e19
Feb 08, 2011
- All analysis logic_names should be lower case. · 0273c1cd
  Andreas Kusalananda Kähäri authored 14 years ago
  
  0273c1cd
Dec 15, 2010
- added pattern option so more than one db can be done at a time · 3de52e51
  Ensembl Account authored 14 years ago
  
  3de52e51
May 11, 2010

Fixed bug that showed up on Y chromosome and problem with not deleting entries... · bb674e0b

Susan Fairley authored 14 years ago

Fixed bug that showed up on Y chromosome and problem with not deleting entries when no analysis description was present, see release 58 notes for more details.

bb674e0b

Feb 02, 2010
- Use 'Genes (density)' rather than 'knownGeneDensity' as the display label. · 796caf31
  Andreas Kusalananda Kähäri authored 15 years ago
  
  796caf31
Nov 19, 2009
- update perl to /usr/local/ensembl/bin/perl · 087737f8
  Ian Longden authored 15 years ago
  
  087737f8
Mar 26, 2009
- remove entries from analysis_description using logic name instead of display label · 086f24d2
  Daniel Rios authored 16 years ago
  
  086f24d2
Apr 24, 2008
- Sort slices by their coordinate system rank, then by their length. Then · b6070b26
  Andreas Kusalananda Kähäri authored 16 years ago
```
process the first 100 of them.
```
  b6070b26
Apr 23, 2008
- Increase $long_slice_count from 100 to 125. Since the 'MT' chromosome · ddebf02c
  Andreas Kusalananda Kähäri authored 16 years ago
```
in human is number 118 in length, no gene, %gc, or SNP density features
were being calculated for it.
```
  ddebf02c
Sep 27, 2007
- Make sure the analysis_description is also deleted and properly · 6d7cf213
  Andreas Kusalananda Kähäri authored 17 years ago
```
reinstated.  The analysis_id in the analysis table and in the
analysis_description table seems to become unsynced otherwise.
```
  6d7cf213
Jan 31, 2007
- fixed problems with new density_type analysis_id updates · 36755131
  Damian Smedley authored 18 years ago
  
  36755131
Dec 19, 2006
- Now delete old features before starting to avoid creating duplicates. · dafa90c8
  Glenn Proctor authored 18 years ago
  
  dafa90c8
Sep 06, 2006
- type->biotype · db09297e
  Glenn Proctor authored 18 years ago
  
  db09297e
Nov 24, 2005
- use region features · 5633b94e
  Arne Stabenau authored 19 years ago
  
  5633b94e
Jul 04, 2005
- *** empty log message *** · 1c35fced
  Jan-hinnerk Vogel authored 19 years ago
  
  1c35fced
Oct 22, 2004
- Changed method of identifying pseudogenes. · 04e17dc0
  Glenn Proctor authored 20 years ago
  
  04e17dc0
Aug 16, 2004
- db->prepare() => db->dbc()->prepare() · 692b4494
  Graham McVicker authored 20 years ago
  
  692b4494
Mar 22, 2004
- all the same calling parameters, some database prechecks · 0ea929c4
  Arne Stabenau authored 21 years ago
  
  0ea929c4
Feb 26, 2004
- updated by Graham · d94abf6c
  Web Admin authored 21 years ago
  
  d94abf6c
Feb 17, 2004
- Examples for creating and reading density features. Three types are given.... · 09726695
  Ian Longden authored 21 years ago
```
Examples for creating and reading density features.  Three types are given. (%GC, %repeat and gene count)
```
  09726695