Commits · 86bf89a649d036c250b12105b3e294482a53f9ef · ensembl-gh-mirror / ensembl

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Sep 29, 2011
- Populating %attrib_codes hash from the biotype table in the production database · afd2cdde
  Monika Komorowska authored 13 years ago
  
  afd2cdde
Aug 16, 2011
- added new biotypes · a0df70c7
  Magali Ruffier authored 13 years ago
  
  a0df70c7
Jun 23, 2011
- Changes for submit_density_features.pl script · 43554d01
  Monika Komorowska authored 13 years ago
  
  43554d01
Jun 02, 2011
- Added extra biotype · a1e0f0f1
  Daniel Sobral authored 13 years ago
  
  a1e0f0f1
Apr 15, 2011
- Fix for massive memory usage on snpstats · fb0c8780
  William McLaren authored 13 years ago
  
  fb0c8780
Mar 09, 2011
- Added a couple of biotypes to the list. · 11a28d6c
  Daniel Sobral authored 14 years ago
  
  11a28d6c
Dec 15, 2010
- added pattern option so more than one db can be done at a time (st3) · 96dfacc7
  Ensembl Account authored 14 years ago
  
  96dfacc7
Apr 15, 2010
- Small changes to try to make the script more memory efficient. · 253bcc8f
  Andreas Kusalananda Kähäri authored 14 years ago
  
  253bcc8f
Nov 04, 2009
- Updated the script for new gene.biotype values processed_transcript and lincRNA. · 581f7c2b
  Michael Schuster authored 15 years ago
  
  581f7c2b
Mar 18, 2009
- Changed code IgSeq to Ig · 04a9a3ae
  Bronwen Aken authored 16 years ago
```
Added transcribed_pseudogene to the pseudo code group
```
  04a9a3ae
Mar 17, 2009
- Actually, rather don't include non-ref sequences for now. (The haplotypes... · bf06a56f
  Bronwen Aken authored 16 years ago
```
Actually, rather don't include non-ref sequences for now. (The haplotypes don't have their own Chromosome summary page so these stats won't be displayed.)
```
  bf06a56f
- Was not calculating stats for haplotype regions in human - caused healthcheck complaint · 28bb0c47
  Bronwen Aken authored 16 years ago
  
  28bb0c47
Jun 11, 2008
- Havana and Ig pseudogenes will all get attrib pseudo · f52bfafb
  Bronwen Aken authored 16 years ago
  
  f52bfafb
Jun 10, 2008
- Human biotypes have changed from eg. J_segment to IG_J_gene · e3a3bf9c
  Bronwen Aken authored 16 years ago
```
The script has been updated accordingly.
```
  e3a3bf9c
Nov 29, 2007
- Added retrotransposed. · 147ed239
  Glenn Proctor authored 17 years ago
  
  147ed239
Nov 21, 2007
- Added snlRNA. · 2e87f045
  Glenn Proctor authored 17 years ago
  
  2e87f045
Feb 05, 2007
- added new IgSeg types · 0003592b
  Damian Smedley authored 18 years ago
  
  0003592b
Nov 20, 2006
- added ncRNA to list of attrib codes · 6f931bdb
  Julio Fernandez Banet authored 18 years ago
  
  6f931bdb
- added ncRNA to list of attrib codes · 700fd0e8
  Julio Fernandez Banet authored 18 years ago
  
  700fd0e8
Oct 02, 2006
- SNPCount entries weren't being deleted before being recalculated. · 8f57c30b
  Glenn Proctor authored 18 years ago
  
  8f57c30b
Sep 12, 2006
- Clean up existing attributes for gene counts before starting to prevent multiple entries. · b59d7f57
  Glenn Proctor authored 18 years ago
  
  b59d7f57
Jun 27, 2006
- Added RNA pseudogene counts; contribute to GeneNo_RNA_pseu attribute. · 4c54e14c
  Glenn Proctor authored 18 years ago
  
  4c54e14c
May 25, 2006
- Updated the attrib_codes for Mt_tRNA and Mt_rRNA · d73ef122
  Abel Ureta-Vidal authored 18 years ago
  
  d73ef122
Nov 24, 2005
- new gene counts by biotype · e5d968a4
  Arne Stabenau authored 19 years ago
  
  e5d968a4
Nov 24, 2004
- changed to use variation database for snps · 0561890c
  Arne Stabenau authored 20 years ago
  
  0561890c
Oct 22, 2004
- Changed method of identifying pseudogenes. · 04e17dc0
  Glenn Proctor authored 20 years ago
  
  04e17dc0
Aug 16, 2004
- db->prepare() => db->dbc()->prepare() · 692b4494
  Graham McVicker authored 20 years ago
  
  692b4494
Jul 08, 2004
- made it possible to calc snp counts without doing gene counts and vice-versa · 949fe813
  Graham McVicker authored 20 years ago
  
  949fe813
Apr 18, 2004
- Arne's uncommitted changes: addition of snp count calculations · 3964c3c0
  Graham McVicker authored 20 years ago
  
  3964c3c0
Mar 22, 2004
- all the same calling parameters, some database prechecks · 0ea929c4
  Arne Stabenau authored 21 years ago
  
  0ea929c4
Mar 02, 2004
- update · 3da5485b
  Web Admin authored 21 years ago
  
  3da5485b
- updated for changes related to seq_region_attribs · 9dd921b1
  Graham McVicker authored 21 years ago
  
  9dd921b1
Feb 27, 2004
- script to calculate some stats on chromosomes (gene counts) · 7e6448ca
  Graham McVicker authored 21 years ago
  
  7e6448ca