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- Jun 01, 2011
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Glenn Proctor authored
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Rhoda Kinsella authored
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- Apr 14, 2011
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Rhoda Kinsella authored
Added code to fix issue with Corf genes in zebrafish. The gene names were not being modified to look like hsC*orf*-like. This now works.
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- Apr 08, 2011
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Glenn Proctor authored
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- Apr 07, 2011
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Glenn Proctor authored
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- Mar 08, 2011
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Glenn Proctor authored
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Glenn Proctor authored
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- Mar 07, 2011
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Glenn Proctor authored
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- Dec 10, 2010
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Glenn Proctor authored
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Glenn Proctor authored
Add projected xrefs to genes rather than transcripts by default if there is no equivalent type in the target database.
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- Dec 08, 2010
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Rhoda Kinsella authored
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Rhoda Kinsella authored
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- Dec 07, 2010
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Glenn Proctor authored
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- Feb 02, 2010
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Rhoda Kinsella authored
Added code to delete names/GO terms if the -delete_only option is specified. Added code to check whether -registryconf is submitted as a string from the submit_projections.pl script or as a file on the command line.
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- Nov 04, 2009
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Rhoda Kinsella authored
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- May 27, 2009
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Glenn Proctor authored
Use the translations of the _canonical_ transcripts of the source and target genes as the source of GO terms to project, rather than simply the longest translation in each, which was a bit arbitrary and didn't alway work. Also make the print option for GO term projection a bit more verbose - aids debugging.
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- May 21, 2009
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Glenn Proctor authored
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- Feb 11, 2009
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Glenn Proctor authored
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- Jan 27, 2009
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Glenn Proctor authored
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- Nov 25, 2008
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Glenn Proctor authored
Skip projection of genes from sources with "clone" in the db name - should stop mouse clone names being projected to rat & kangaroo rat.
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- Nov 13, 2008
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Glenn Proctor authored
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Glenn Proctor authored
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- Aug 15, 2008
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Glenn Proctor authored
Set gene description to NULL and status back to KNOWN_BY_PROJECTION when deleting previously-projected xrefs.
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- Aug 12, 2008
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Glenn Proctor authored
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- Aug 04, 2008
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Glenn Proctor authored
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- Jul 03, 2008
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Glenn Proctor authored
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- Jun 10, 2008
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Glenn Proctor authored
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- Jun 09, 2008
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Glenn Proctor authored
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- Jun 06, 2008
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Glenn Proctor authored
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- Jan 29, 2008
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Glenn Proctor authored
Skip genes that are listed in Compara but aren't in the relevant core databases. Shouldn't be necessary in production runs but makes testing with previous Compara versions easier.
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- Nov 20, 2007
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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- Nov 16, 2007
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Glenn Proctor authored
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Glenn Proctor authored
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Glenn Proctor authored
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- Nov 15, 2007
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Glenn Proctor authored
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- Oct 12, 2007
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Glenn Proctor authored
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- Oct 10, 2007
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Glenn Proctor authored
Now use load_registry_from_db() as well as spcifying settings in config file. Should mean that only Compara has t be defined in conf file.
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- Oct 02, 2007
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Glenn Proctor authored
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