Commits · b539fb76ea7613ac198c14252f0cc8960f75809e · ensembl-gh-mirror / ensembl

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Jul 25, 2018
- backport ENSCORESW-2767 : multi-species support for protein feature · b539fb76
  Magali Ruffier authored 6 years ago
  
  b539fb76
- Merge pull request #268 from Ensembl/bugfix/empty_rfam · 89a73e1b
  Magali Ruffier authored 6 years ago
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ENSCORESW-2810: pass RFAMParser even if no xrefs found
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  Unverified
  
  89a73e1b
- ENSCORESW-2810 : pass RFAMParser even if no xrefs found · ca72a63e
  Magali Ruffier authored 6 years ago
  
  ca72a63e
Jul 18, 2018
- remove UniGene source for vertebrates · f21f823a
  Magali Ruffier authored 6 years ago
  
  f21f823a
Jul 10, 2018
- Merge pull request #262 from muffato/master · 8d2df871
  Kieron Taylor authored 6 years ago
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Do not call fetchrow_hashref() if the statement has been exhausted
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  Unverified
  
  8d2df871
Jul 06, 2018
- Do not call fetchrow_hashref() if the statement has been exhausted (and finished) · 6ff4d4f2
  Matthieu Muffato authored 6 years ago
  
  6ff4d4f2
- Merge pull request #260 from Ensembl/feature/schema_update · 49ca86c9
  Magali Ruffier authored 6 years ago
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update to latest schema
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  49ca86c9
Jul 04, 2018
- Merge pull request #259 from Ensembl/bugfix/fetch_duplicate · 67a2bf99
  Alessandro Vullo authored 6 years ago
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ENSCORESW-2740: fetch correct xref
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  Unverified
  
  67a2bf99
Jul 03, 2018
- update to latest schema · a4acb299
  Magali Ruffier authored 6 years ago
  
  a4acb299
- ENSCORESW-2740 : fetch correct xref · fede09ab
  Magali Ruffier authored 6 years ago
  
  fede09ab
Jul 02, 2018
- Merge pull request #257 from muffato/master · 9a09f02e
  Magali Ruffier authored 6 years ago
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The Compara API can deal with Slice objects directly
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  Unverified
  
  9a09f02e
- The Compara API can deal with Slice objects directly · b520b72d
  Matthieu Muffato authored 6 years ago
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This also gets rid of the deprecation warning of
fetch_all_by_GenomeDB_region
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  b520b72d
Jun 29, 2018
- Merge pull request #250 from Ensembl/bugfix/cpanfile_update · b4d7d3e8
  Matthew Laird authored 6 years ago
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fixed cpanfile syntax
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  Unverified
  
  b4d7d3e8
- Merge pull request #256 from Ensembl/bugfix/default_aln_type · f218e254
  Matthew Laird authored 6 years ago
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ENSCORESW-2758: default align type is NULL
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  Unverified
  
  f218e254
- Correct title · 9756a616
  Magali Ruffier authored 6 years ago
  
  Unverified
  
  9756a616
- Merge pull request #247 from Ensembl/bugfix/reactome_acc · 10d791a5
  Matthew Laird authored 6 years ago
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Bugfix/reactome acc
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  10d791a5
- Merge pull request #246 from tgrego/seq_ont_mapper_deprecation · b3541920
  Matthew Laird authored 6 years ago
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SequenceOntologyMapper deprecation
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  Unverified
  
  b3541920
- Merge pull request #253 from at7/pre_release_94_cleanup · 1239645e
  Matthew Laird authored 6 years ago
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Pre release 94 cleanup
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  Unverified
  
  1239645e
- Merge pull request #248 from Ensembl/feature/biotype_methods · 27b82aca
  Matthew Laird authored 6 years ago
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ENSCORESW-2695: expand methods for REST support
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  Unverified
  
  27b82aca
- Schema version bump in preparation for branching. · 7bb26054
  Matthew Laird authored 6 years ago
  
  7bb26054
Jun 28, 2018
- patch test databases · eafbbc31
  Magali Ruffier authored 6 years ago
  
  eafbbc31
- refactoring of feature_so_acc using constant · 4548a94f
  Tiago Grego authored 6 years ago
  
  4548a94f
- ENSCORESW-2758 : default align type is NULL · 012e65ed
  Magali Ruffier authored 6 years ago
  
  012e65ed
- Merge pull request #255 from Ensembl/bugfix/patch_name · e59c9d4d
  Matthew Laird authored 6 years ago
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fix patch name
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  Unverified
  
  e59c9d4d
- extend special characters to allow · c4183ecf
  Magali Ruffier authored 6 years ago
  
  c4183ecf
- add deprecation warning to POD · af3e9891
  Anja Thormann authored 6 years ago
  
  af3e9891
- fix patch name · 8cf95391
  Magali Ruffier authored 6 years ago
  
  8cf95391
Jun 26, 2018
- Merge pull request #251 from Ensembl/bugfix/variation_patch · 7e889f35
  Matthew Laird authored 6 years ago
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Apply missing MySQL test-database patches from 90 to 93
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  Unverified
  
  7e889f35
Jun 25, 2018
- Merge pull request #254 from Ensembl/feature/havana_desc · b00cbe3f
  Matthew Laird authored 6 years ago
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ENSCORESW-2742: clean up descriptions from automatic updates
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  Unverified
  
  b00cbe3f
Jun 22, 2018
- more specific regex · 489a9c0f
  Magali Ruffier authored 6 years ago
  
  489a9c0f
Jun 21, 2018
- ENSCORESW-2742 : clean up descriptions from automatic updates · b2d24ede
  Magali Ruffier authored 6 years ago
  
  b2d24ede
Jun 20, 2018
- refactored Feature::feature_so_acc to be explicit in caller module · 80dc45d8
  Tiago Grego authored 6 years ago
  
  80dc45d8
- feature_so_acc explicit in caller module · eb068001
  Tiago Grego authored 6 years ago
  
  eb068001
- updated Slice and UTR to have package so lookup table · 93a2f7bf
  Tiago Grego authored 6 years ago
  
  93a2f7bf
Jun 19, 2018
- update deprecation date · 91cf5f65
  Anja Thormann authored 6 years ago
  
  91cf5f65
- update deprecation date · 8e3f4791
  Anja Thormann authored 6 years ago
  
  8e3f4791
- remove get_by_strain in e95 when code that calls the method is also · 23edaf1b
  Anja Thormann authored 6 years ago
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removed
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  23edaf1b
- remove tests for deleted code · 278b36ca
  Anja Thormann authored 6 years ago
  
  278b36ca
- get_all_VariationFeatures cannot be depreacted · d2aa9f66
  Anja Thormann authored 6 years ago
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used in webcode on AlignSlice object
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  d2aa9f66
- remove deprecated code · ec1bc6a7
  Anja Thormann authored 6 years ago
  
  ec1bc6a7