Commits · bc765252e0accb6b99fc7de7ca1061a37004b279 · ensembl-gh-mirror / ensembl

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Nov 27, 2012
- Fixed an omission in taking hash keys on a reference. · bc765252
  Kieron Taylor authored 12 years ago
  
  bc765252
Nov 26, 2012
- = does not work. We just assigned $type to 'cisred'. eq is what was wanted · 547cfbab
  Andy Yates authored 12 years ago
  
  547cfbab
- Final changes to ensure the code works as expected · b64f928c
  Andy Yates authored 12 years ago
  
  b64f928c
Nov 23, 2012
- Counting all exons & transcripts now · 78cb05e7
  Andy Yates authored 12 years ago
  
  78cb05e7
- Classy. Parent caller will abort looping if given a non-true value back. · 53780a12
  Andy Yates authored 12 years ago
  
  53780a12
- adding eval error checking · f010f65b
  Andy Yates authored 12 years ago
  
  f010f65b
Nov 22, 2012
- adding counts · c68b0137
  Andy Yates authored 12 years ago
  
  c68b0137
- help reworked · 3b3ad1ce
  Andy Yates authored 12 years ago
  
  3b3ad1ce
- Can now compare transcripts and fixed some errors in the mapping code · c91cd6c9
  Andy Yates authored 12 years ago
  
  c91cd6c9
- Updated the HTML code + display table colours in the tables list · 8406d0bf
  Laurent Gil authored 12 years ago
  
  8406d0bf
- Support locking of tables when doing this · 61cc9e2f
  Andy Yates authored 12 years ago
  
  61cc9e2f
- Adding seq_region_end to the sort · 97ab8bf6
  Andy Yates authored 12 years ago
  
  97ab8bf6
Nov 21, 2012
- missed stderr · a7b53b89
  Andy Yates authored 12 years ago
  
  a7b53b89
- missed two prints · 649c8271
  Andy Yates authored 12 years ago
  
  649c8271
- missed a message and got the time the wrong way around · 74162582
  Andy Yates authored 12 years ago
  
  74162582
- import posix · 33242c35
  Andy Yates authored 12 years ago
  
  33242c35
- adding times · 9be725ac
  Andy Yates authored 12 years ago
  
  9be725ac
- Trying to sort feature tables · a604d5e1
  Andy Yates authored 12 years ago
  
  a604d5e1
- Fixing flush code · 77f083f3
  Andy Yates authored 12 years ago
  
  77f083f3
Nov 20, 2012
- Adding a "write_every" option as otherwise memory consumption is a bit large · 25988522
  Andy Yates authored 12 years ago
  
  25988522
- Fail if we have overlapping seq region ids · ad89744c
  Andy Yates authored 12 years ago
  
  ad89744c
- Warn after every 2000 parsed records · 55ad3802
  Andy Yates authored 12 years ago
  
  55ad3802
- Force quit · f3bab73d
  Andy Yates authored 12 years ago
  
  f3bab73d
- no password defaulting for dnadb. bad · 44021395
  Andy Yates authored 12 years ago
  
  44021395
- better password logic and using dbc() · 55988b5f
  Andy Yates authored 12 years ago
  
  55988b5f
- bad logic · 9a7ecff7
  Andy Yates authored 12 years ago
  
  9a7ecff7
- adding password only if needed · 15bc2107
  Andy Yates authored 12 years ago
  
  15bc2107
- default group is core · 3128ace2
  Andy Yates authored 12 years ago
  
  3128ace2
Nov 19, 2012
- Need to specify a dnadb · 0d7fc8eb
  Andy Yates authored 12 years ago
  
  0d7fc8eb
- Don't bother with URLs · ef486f9b
  Andy Yates authored 12 years ago
  
  ef486f9b
- NCBI CCDS mouse file was wrong · 8bfb3b27
  Andy Yates authored 12 years ago
  
  8bfb3b27
Nov 18, 2012
- More options · 7fea0ca6
  Andy Yates authored 12 years ago
  
  7fea0ca6
Nov 17, 2012
- Import for BED file. · b4528f75
  Andy Yates authored 12 years ago
  
  b4528f75
Nov 16, 2012
- do not use the same variable name for two distinct things · 29361c46
  Magali Ruffier authored 12 years ago
```
when looping, if looking for previous_dbname, would always be defined because of the last loop, so comparing the wrong databases
```
  29361c46
- Caught a few more CCDS slips through the net · 21129c6d
  Andy Yates authored 12 years ago
  
  21129c6d
- added a dbtype option which allows to run on non-core databases · 4bc3174e
  Magali Ruffier authored 12 years ago
```
default value is core, so running without specifying anything will be as before
```
  4bc3174e
- used RGD as gene display xref · 7e4f0e02
  Magali Ruffier authored 12 years ago
  
  7e4f0e02
Nov 14, 2012
- Script to examine exons before and after projection. Designed to work with... · 916be7be
  Kieron Taylor authored 12 years ago
```
Script to examine exons before and after projection. Designed to work with Anacode Support objects, so jiggery pokery with paths needed to get started. Use with arguments similar to the Assembly Mapping pipeline.

Needs more POD.
```
  916be7be
- Make the efo search case-insensitive · 2a7421cf
  Andy Yates authored 12 years ago
  
  2a7421cf
- Reverting. Sharon & I were mistaken · e2a84aab
  Andy Yates authored 12 years ago
  
  e2a84aab