Commits · bd2ae0cf8cd873c8f0e1e97a60b8d92aad1c3581 · ensembl-gh-mirror / ensembl

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Last successful update 6 months ago.

Dec 22, 2017
- allow missing version file · bd2ae0cf
  Magali Ruffier authored 7 years ago
  
  bd2ae0cf
- allow missig version file · ad22629b
  Magali Ruffier authored 7 years ago
  
  ad22629b
- add db_url option · 5502012b
  Magali Ruffier authored 7 years ago
  
  5502012b
Dec 06, 2017
- remove unused queries · dc14a2f3
  Magali Ruffier authored 7 years ago
  
  dc14a2f3
- ensure fasta is parsed before GPFF · 50604fd8
  Magali Ruffier authored 7 years ago
  
  50604fd8
- ENSCORESW-2524 : add EntrezGene to mRNA as well · 97a1898c
  Magali Ruffier authored 7 years ago
  
  97a1898c
Dec 04, 2017
- include scaffolds for mapping · 506bf65b
  Magali Ruffier authored 7 years ago
  
  506bf65b
- ENSCORESW-2517 : only compare on same strand · 6cb294bd
  Magali Ruffier authored 7 years ago
  
  6cb294bd
Dec 01, 2017
- exhaustive check on non-conventional accessions · b52bcf34
  Magali Ruffier authored 7 years ago
  
  b52bcf34
Nov 30, 2017
- remove Vega related xref sources · d2b05e66
  Magali Ruffier authored 7 years ago
  
  d2b05e66
Nov 07, 2017
- ENSCORESW-2485 : do not delete all possible mappings · 4230f581
  Magali Ruffier authored 7 years ago
  
  4230f581
Nov 03, 2017
- keep old mappings, always create new entry · b0ec73eb
  Magali Ruffier authored 7 years ago
  
  b0ec73eb
- capture mRNA for peptide information · 980bdb4d
  Magali Ruffier authored 7 years ago
  
  980bdb4d
- keep failed_cutoff to store alignment scores · d7ee7de6
  Magali Ruffier authored 7 years ago
  
  d7ee7de6
Oct 23, 2017
- config update for 91 · 4eaaa332
  Magali Ruffier authored 7 years ago
  
  4eaaa332
- separate VGNC parser, simplified from HGNC · 450af159
  Magali Ruffier authored 7 years ago
  
  450af159
Sep 21, 2017
- update to new RefSeq format · 46a15f94
  Magali Ruffier authored 7 years ago
  
  46a15f94
Jul 20, 2017
- ENSCORESW-2355 : order by highest score for reproducible results · 17432a9a
  Magali Ruffier authored 7 years ago
  
  17432a9a
Jul 03, 2017

Abandon MyISAM for xref pipeline. Core production server has too few resources... · 94706fef

Kieron Taylor authored 7 years ago

Abandon MyISAM for xref pipeline. Core production server has too few resources devoted to InnoDB and the pipeline is failing at times.

94706fef

Jun 28, 2017

Change DB engine for primary_xref · c997c206

Kieron Taylor authored 7 years ago

Workaround for “The total number of locks exceeds the lock table size” found when running xref pipeline

c997c206

Jun 21, 2017
- Wrong server for xref pipeline · 826cc057
  Matthew Laird authored 7 years ago
```
 Please enter the commit message for your changes. Lines starting
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  826cc057
Jun 16, 2017
- ENSCORESW-2335 : correct RNAcentral capitalisation · 1c81df13
  Magali Ruffier authored 7 years ago
  
  1c81df13
Jun 13, 2017
- ENSCORESW-2331 : skip any non-standard accessions · b02b21fe
  Magali Ruffier authored 7 years ago
  
  b02b21fe
Jun 01, 2017
- ENSCORESW-1922 : remove status · 957a6cb9
  Magali Ruffier authored 7 years ago
  
  957a6cb9
Apr 20, 2017
- version is not always available · fb829415
  Magali Ruffier authored 7 years ago
  
  fb829415
- ENSCORESW-2277 : accession pattern at start of line · 5092b51e
  Magali Ruffier authored 7 years ago
  
  5092b51e
Apr 13, 2017
- ignore changes that are the same · d8cfa651
  Magali Ruffier authored 7 years ago
  
  d8cfa651
- Upstream location for MGI files has changed · 3a76fdeb
  Matthew Laird authored 7 years ago
  
  3a76fdeb
Apr 11, 2017
- Scientific name change for wallaby. · a336b355
  Alessandro Vullo authored 7 years ago
  
  a336b355
- Vega DBs retired this release. · b5475088
  Alessandro Vullo authored 7 years ago
  
  b5475088
Apr 07, 2017
- Had problems with Zebrafish due to some entries having non-digit version. · a290c895
  Alessandro Vullo authored 7 years ago
  
  a290c895
Mar 22, 2017
- xref sources for rodent species · 8933c0b7
  Magali Ruffier authored 8 years ago
  
  8933c0b7
- some misformatted entries in RefSeq data · 6f0b72dc
  Magali Ruffier authored 8 years ago
  
  6f0b72dc
Feb 15, 2017
- update example with new ftp url · 1cdcb3a6
  Magali Ruffier authored 8 years ago
  
  1cdcb3a6
- use port from config · 212f2d02
  Magali Ruffier authored 8 years ago
  
  212f2d02
Feb 14, 2017
- use port from configuration · 16191d64
  Magali Ruffier authored 8 years ago
  
  16191d64
Feb 08, 2017
- new EBI server settings · 2cedd120
  Magali Ruffier authored 8 years ago
  
  2cedd120
- ENSCORESW-369 : column count was wrong · 36385517
  Magali Ruffier authored 8 years ago
  
  36385517
Feb 07, 2017
- ENSCORESW-1731 : remove mislinked synonyms · 59951a73
  Magali Ruffier authored 8 years ago
  
  59951a73
- add new staging port, not 3306 any more · 6773339c
  Magali Ruffier authored 8 years ago
  
  6773339c