Commits · c25dcd6d3e17d5c223eee767fe1b3338927e9631 · ensembl-gh-mirror / ensembl

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Nov 30, 2015
- To use dbprimary_acc instead of display_id;Fix GO source duplication · c25dcd6d
  ChuangKee Ong authored 9 years ago
  
  c25dcd6d
Nov 27, 2015
- ENSCORESW-1583 : do not skip all dependent xrefs · 89f30aff
  Magali Ruffier authored 9 years ago
  
  89f30aff
- Merge branch 'master' of https://github.com/Ensembl/ensembl · 2687dcfc
  Magali Ruffier authored 9 years ago
  
  2687dcfc
- ENSCORESW-1573 : do not include PAR for duplicated genes · e47843db
  Magali Ruffier authored 9 years ago
  
  e47843db
Nov 26, 2015
- Merge pull request #102 from willmclaren/fix/vf-fake-adaptor-circular · 0c98601e
  Dan Staines authored 9 years ago
```
fix for VariationFeatures using a fake adaptor on circular slices
```
  0c98601e
- couple more methods tested · be71197b
  Magali Ruffier authored 9 years ago and Dan Staines committed 9 years ago
  
  be71197b
Nov 25, 2015
- Will this post notifications to slack? hope so · 2211c7ed
  Andy Yates authored 9 years ago
  
  2211c7ed
- deal with situation where ensembl_taxonomy API is not available but the database is · 2efe4f22
  Dan Staines authored 9 years ago
  
  2efe4f22
- couple more methods tested · 987d1b0d
  Magali Ruffier authored 9 years ago
  
  987d1b0d
Nov 24, 2015
- Merge pull request #101 from willmclaren/fix/vf-fake-adaptor-circular · b27c653a
  Magali Ruffier authored 9 years ago
```
fix for VariationFeatures using a fake adaptor on circular slices
```
  b27c653a
- update fix with suggestions · 959c5ac3
  William McLaren authored 9 years ago
  
  959c5ac3
- changed package name for taxonomy · b89b3719
  Dan Staines authored 9 years ago
  
  b89b3719
- more test for GeneAdaptor methods · 8bd313b7
  Magali Ruffier authored 9 years ago
  
  8bd313b7
Nov 23, 2015
- Merge pull request #99 from Ensembl/ENSCORESW-1454 · fb9becb3
  Magali Ruffier authored 9 years ago
```
Enscoresw 1454
```
  fb9becb3
- fix for VariationFeatures using a fake adaptor on circular slices · a847e96f
  William McLaren authored 9 years ago
  
  a847e96f
Nov 20, 2015
- Extra tab snuck in to test database table · dc7b384d
  Matthew Laird authored 9 years ago
  
  dc7b384d
- - If fetch_by_region is toplevel, try to use the synonym table to find the region name · c6cb84f8
  Matthew Laird authored 9 years ago
```
- Corresponding test to test functionality
```
  c6cb84f8
Nov 19, 2015
- ensure correct go_xref is used · 471a7903
  Magali Ruffier authored 9 years ago
  
  471a7903
- more tests for assembly mappers · b621b0c9
  Magali Ruffier authored 9 years ago
  
  b621b0c9
Nov 18, 2015
- testing untested methods · af67b4e2
  Magali Ruffier authored 9 years ago
  
  af67b4e2
- import missing method · 7b630f7b
  Magali Ruffier authored 9 years ago
  
  7b630f7b
Nov 17, 2015
- more dbentry tests · c49c3392
  Magali Ruffier authored 9 years ago
  
  c49c3392
Nov 16, 2015
- more tests for dbentry and dbentryadaptor · c0b8a199
  Magali Ruffier authored 9 years ago
  
  c0b8a199
- deprecated methods as data is not available · 38df5f81
  Magali Ruffier authored 9 years ago
  
  38df5f81
- more tests for untested methods · 7976b564
  Magali Ruffier authored 9 years ago
  
  7976b564
- deprecated broken method · 5fb74911
  Magali Ruffier authored 9 years ago
  
  5fb74911
Nov 12, 2015
- Merge pull request #97 from danstaines/master · ce0593ce
  Magali Ruffier authored 9 years ago
```
added taxonomy adaptor support
```
  ce0593ce
- basic test for registry · 0f534f4b
  Dan Staines authored 9 years ago
  
  0f534f4b
- empty files, not one-liner · aeec515a
  Magali Ruffier authored 9 years ago
  
  aeec515a
- added no_warnings check in tests · a81f01b8
  Magali Ruffier authored 9 years ago
  
  a81f01b8
- add perl critic to travis test · c68a7ad4
  Magali Ruffier authored 9 years ago
  
  c68a7ad4
- fixed for Perl critic · d07bf3d9
  Magali Ruffier authored 9 years ago
  
  d07bf3d9
- is_chromosome uses karyotype rank attribute · 10eaf6bf
  Magali Ruffier authored 9 years ago
  
  10eaf6bf
- rename package to match file · f2a8cf6b
  Magali Ruffier authored 9 years ago
  
  f2a8cf6b
- removed big data not used in tests · 467e0a4e
  Magali Ruffier authored 9 years ago
  
  467e0a4e
- use explicit slice with adaptor · fa6cb567
  Magali Ruffier authored 9 years ago
  
  fa6cb567
- do not allow warnings · eddd8762
  Magali Ruffier authored 9 years ago
  
  eddd8762
- remove misc_attrib data as big and not needed · e9e72978
  Magali Ruffier authored 9 years ago
  
  e9e72978
- patch mouse test data · 67e161b1
  Magali Ruffier authored 9 years ago
  
  67e161b1
- Merge pull request #96 from Ensembl/feature/deprecate · a92c4755
  Magali Ruffier authored 9 years ago
```
Feature/deprecate
```
  a92c4755