Commits · e59b6a8a222763f527be73752c3ebb80617ab504 · ensembl-gh-mirror / ensembl

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Jun 01, 2011
- *** empty log message *** · e59b6a8a
  Rhoda Kinsella authored 13 years ago
  
  e59b6a8a
- Added change to ZFIN regular expression for Corf gene names · 712e4b09
  Rhoda Kinsella authored 13 years ago
  
  712e4b09
May 26, 2011

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key... · b9458db0

Ian Longden authored 13 years ago

CCDS -> Ensembl transcript is not a one to one mapping so cannot use a key value pairs in hash. Hence now the hash uses a anonymous array to stire multiple values

b9458db0

May 25, 2011
- Some redundant Lite references removed from commented out tests. · 52e726a1
  Kieron Taylor authored 13 years ago
  
  52e726a1
- Additional references to Ensembl::Lite removed · 15c55521
  Kieron Taylor authored 13 years ago
  
  15c55521
- Removing ancient Ensembl::Lite package that is neither used nor functional · bb9171f3
  Kieron Taylor authored 13 years ago
  
  bb9171f3
- added / to uniprot search to make sure we do not link to uniprot_genename · 400b9e14
  Ian Longden authored 13 years ago
  
  400b9e14
May 24, 2011
- add the synonyms · 454cac5d
  Ian Longden authored 13 years ago
  
  454cac5d
- return the xref_id of the newly created xref · 82a2218d
  Ian Longden authored 13 years ago
  
  82a2218d
- print the number of synonyms added too as this is usefull · 6558f5cc
  Ian Longden authored 13 years ago
  
  6558f5cc
- Deleted data for dbprimary_acc_linkable. · 25d9b4fd
  Monika Komorowska authored 13 years ago
  
  25d9b4fd
- release changed from 62 -> 63 · 08baaff1
  Ian Longden authored 13 years ago
  
  08baaff1
- better messages and tidy · 371f52bc
  Ian Longden authored 13 years ago
  
  371f52bc
- Added confirmation before overwriting a file. · 4baae37e
  Monika Komorowska authored 13 years ago
  
  4baae37e
- Tables are dumped out to a specified directory. · bf474587
  Monika Komorowska authored 13 years ago
  
  bf474587
- Set label to the description · c4e623e1
  Ian Longden authored 13 years ago
  
  c4e623e1
- Add synonyms · 95304162
  Ian Longden authored 13 years ago
  
  95304162
- fix for unmapped xref having possible multiple masters having same index · 16615a5a
  Ian Longden authored 13 years ago
  
  16615a5a
- set info_text to null instead of empty string · 09a6c22e
  Ian Longden authored 13 years ago
  
  09a6c22e
- Better messaging and tidy · d1180ed6
  Ian Longden authored 13 years ago
  
  d1180ed6
May 23, 2011
- Updated link to xref schema pdf. · 540d4a30
  Monika Komorowska authored 13 years ago
  
  540d4a30
May 19, 2011
- *** empty log message *** · b90be6b4
  Monika Komorowska authored 13 years ago
  
  b90be6b4
- Fixed dump out option. · ab3ac58a
  Monika Komorowska authored 13 years ago
  
  ab3ac58a
May 18, 2011
- Added option to dump out backup tables. · 0b006002
  Monika Komorowska authored 13 years ago
  
  0b006002
- Script for killing mysql processes by db name pattern. · 473c7216
  Monika Komorowska authored 13 years ago
  
  473c7216
- corrected slice start coords on Iterator method, data was valid but chunks were not quite right · 0fe07321
  Nathan Johnson authored 13 years ago
  
  0fe07321
May 17, 2011
- added has_window_size · 434f77f7
  Nathan Johnson authored 13 years ago
  
  434f77f7
- changed ccds adatabases to be used · 00b8cd4b
  Ian Longden authored 13 years ago
  
  00b8cd4b
- do not remove MGI: from the stat only remove ZFIN_ID: and HGNC:. MGI number ... · 32e63746
  Ian Longden authored 13 years ago
```
do not remove MGI: from the stat only remove ZFIN_ID: and HGNC:.  MGI number  is stored with the MGI:
```
  32e63746
- changed floor to int for ease of use · 57206c8a
  Ian Longden authored 13 years ago
  
  57206c8a
- Changed percentage calculation in warnings. · 1e2e88a9
  Monika Komorowska authored 13 years ago
  
  1e2e88a9
- Ignore Projections in comparisons · ec28d5c3
  Ian Longden authored 13 years ago
  
  ec28d5c3
May 16, 2011
- Updated source ftp for pongo_abelii · e34841d4
  Monika Komorowska authored 13 years ago
  
  e34841d4
May 13, 2011
- Updated section on BasicMapper.pm · 79abdb8b
  Monika Komorowska authored 13 years ago
  
  79abdb8b
- Remove misleading print line · 930ed124
  Ian Longden authored 13 years ago
  
  930ed124
- SQL to change stable_id_idx to non unique for gene, exon, transcript and... · ff771c25
  Monika Komorowska authored 13 years ago
```
SQL to change stable_id_idx to non unique for gene, exon, transcript and translation stable_is tables.
```
  ff771c25
- Delated UNIQUE INDEX on stable_id, version from exon, gene, translation and... · b755198f
  Monika Komorowska authored 13 years ago
```
Delated UNIQUE INDEX on stable_id, version from exon, gene, translation and transcript stable_id tables.
```
  b755198f
- Deleted unique index on stable_id, version from tables exon, gene, translation... · a3b6359b
  Monika Komorowska authored 13 years ago
```
Deleted unique index on stable_id, version from tables exon, gene, translation and transcript stable id.
```
  a3b6359b
- added fetch_Iterator_by_Slice_method · 260001a7
  Nathan Johnson authored 13 years ago
  
  260001a7
- use api_version to get the name of the vega and core databases to be used · ebaff21a
  Ian Longden authored 13 years ago
  
  ebaff21a