Commits · fbac50dd8f3d0ec43f5bb1ada0704a22dcb190cb · ensembl-gh-mirror / ensembl

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Mar 04, 2011
- we now have a controlled vocabulary term to use so don't add a human readable one · fbac50dd
  Steve Trevanion authored 14 years ago
  
  fbac50dd
- Add primary key analysis_web_data_id in analysis_web_data. · 185791af
  Andreas Kusalananda Kähäri authored 14 years ago
```
Add analysis_web_data_id to the logic_name_overview view.

Add view unused_web_data to identified unused web_data.
```
  185791af
- dbentries MUST have an analysis now due to INSERT IGNORE in dbentrie cahnged to just INSERT · fc2098b8
  Ian Longden authored 14 years ago
  
  fc2098b8
- updated to lastest versions of files. Plus ZFIN descriptions file · a783b9f7
  Ian Longden authored 14 years ago
  
  a783b9f7
- now use official naming routines · b17e0bdf
  Ian Longden authored 14 years ago
  
  b17e0bdf
- bug fix to get all the vega transcript extensions · d20ddbf9
  Ian Longden authored 14 years ago
  
  d20ddbf9
Mar 03, 2011
- Add OPTIMIZE TABLE at the end of parsing. · b69927e4
  Andreas Kusalananda Kähäri authored 14 years ago
  
  b69927e4
- More proper use of bind_param(). · 365c2b8b
  Andreas Kusalananda Kähäri authored 14 years ago
  
  365c2b8b
- Put pragmas before "package". · d9a8fad9
  Andreas Kusalananda Kähäri authored 14 years ago
  
  d9a8fad9
- Fix some other cases where bind_param() was not used. · 6236b7b5
  Andreas Kusalananda Kähäri authored 14 years ago
```
In one piece of SQL, use ".. BETWEEN ? AND ?" rather than
".. => ? AND .. <= ?" (for readability).
```
  6236b7b5
- Do proper binding of parameters. · c6462d22
  Andreas Kusalananda Kähäri authored 14 years ago
  
  c6462d22
- Trying to improve our error reporting after user feedback · 67f92518
  Andy Yates authored 14 years ago
  
  67f92518
- tidy up · 667d2cff
  Ian Longden authored 14 years ago
  
  667d2cff
- ignore WITHDRAWN entries · 9c3b2a03
  Ian Longden authored 14 years ago
  
  9c3b2a03
- get descriptions · 3d59aa48
  Ian Longden authored 14 years ago
  
  3d59aa48
- added Vega_transcripts as a way to get vega mapping and fixed but which only... · 99594104
  Ian Longden authored 14 years ago
```
added Vega_transcripts as a way to get vega mapping and fixed but which only allowed one entry in the objext xref table hence reducing the number of matches for Vega
```
  99594104
- added Vega_transcripts as a way to get vega mapping and fixed but which only... · 9282ef78
  Ian Longden authored 14 years ago
```
added Vega_transcripts as a way to get vega mapping and fixed but which only allowed one entry in the objext xref table hence reducing the number of matches for Vega
```
  9282ef78
- aux_GO_goslim_goa_map now aux_GO_goslim_generic_map · e11223c2
  Ian Longden authored 14 years ago
  
  e11223c2
Mar 02, 2011
- removed unnecessary comment · 501dee03
  Daniel Sobral authored 14 years ago
  
  501dee03
- corrected small bug... but I'm not sure if the logic is correct... · 9450c4dc
  Daniel Sobral authored 14 years ago
  
  9450c4dc
- Updated table set tags · 64d05aee
  Monika Komorowska authored 14 years ago
  
  64d05aee
- *** empty log message *** · 3d97aa18
  Monika Komorowska authored 14 years ago
  
  3d97aa18
- Shema version patch. · 6368e2a4
  Monika Komorowska authored 14 years ago
  
  6368e2a4
- *** empty log message *** · e7039d13
  Monika Komorowska authored 14 years ago
  
  e7039d13
- ASMPATCH is also a valid stable ID prefix. · 0c76b1b5
  Andreas Kusalananda Kähäri authored 14 years ago
  
  0c76b1b5
- Remove debugging output. · f9d8f9fd
  Andreas Kusalananda Kähäri authored 14 years ago
  
  f9d8f9fd
- Updated html · d261c7e0
  Monika Komorowska authored 14 years ago
  
  d261c7e0
- Updated documentation. · 4dc809fb
  Monika Komorowska authored 14 years ago
  
  4dc809fb
- Auto generated schema html. · ec3a89ea
  Monika Komorowska authored 14 years ago
  
  ec3a89ea
- Remove unused options. · da95416e
  Andreas Kusalananda Kähäri authored 14 years ago
```
Add options for separate DNA database (commented out).
```
  da95416e
- Documentation updates. · 1711b215
  Monika Komorowska authored 14 years ago
  
  1711b215
- Allow for separate DNA database. · 7b004059
  Andreas Kusalananda Kähäri authored 14 years ago
  
  7b004059
- *** empty log message *** · f772806d
  Monika Komorowska authored 14 years ago
  
  f772806d
- Documented core schema using variation team's markup. · f33cde98
  Monika Komorowska authored 14 years ago
  
  f33cde98
Mar 01, 2011
- This will hopefully keep this mapper from creating new unmapped_reson · fff445f8
  Andreas Kusalananda Kähäri authored 14 years ago
```
entries.
```
  fff445f8
- Updated instructions on loading data into the ontology DB. · 26415307
  Monika Komorowska authored 14 years ago
  
  26415307
- Small update: Only check whether slice is reference once, instead of for each transcript · cd8a5b4a
  Bronwen Aken authored 14 years ago
  
  cd8a5b4a
- Check transcriptis on reference slice before looking for CCDS · 950f8435
  Bronwen Aken authored 14 years ago
  
  950f8435
- Sometimes we need to allow for the automatic retrying of a transaction. Test cases added · dfe09726
  Andy Yates authored 14 years ago
  
  dfe09726
- now uses log_base_path option. If not set, logfil;e & logpath work as previously · 9f90c98f
  Maurice Hendrix authored 14 years ago
  
  9f90c98f