Commits · fc6ced683c9b544127e6f50711ba833b430baf88 · ensembl-gh-mirror / ensembl

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Jan 09, 2004
- Merged in the new-seqstore into HEAD version · fc6ced68
  Arne Stabenau authored 21 years ago
  
  fc6ced68
Jan 08, 2004
- Added get_all_DASFeatures call · ef4bc069
  Will Spooner authored 21 years ago
  
  ef4bc069
- use var -> our; add default value; && -> and · 5cd1f325
  juguang authored 21 years ago
  
  5cd1f325
Jan 05, 2004
- Now test if destination tmp directory exist and warn if not · 460f7510
  Abel Ureta-Vidal authored 21 years ago
  
  460f7510
- Added update_key_value method · 83259192
  Abel Ureta-Vidal authored 21 years ago
  
  83259192
Dec 19, 2003
- added getter/setter for chromosome name · 488e1120
  Patrick Meidl authored 21 years ago
  
  488e1120
- Added unified store/retrieve etc modules · d3b8cead
  Will Spooner authored 21 years ago
  
  d3b8cead
Dec 17, 2003
- Merge from branch 19 · c8d8eb7a
  James Stalker authored 21 years ago
  
  c8d8eb7a
Dec 15, 2003
- Removed stupid tilde warning · 225a7d17
  Web Admin authored 21 years ago
  
  225a7d17
- revert, should be on new seqstore · c9a891e3
  Arne Stabenau authored 21 years ago
  
  c9a891e3
- Put binary search into the mapper lists in case they groe too big · d1578ac5
  Arne Stabenau authored 21 years ago
```
( need to read about perl array implementation ... )
```
  d1578ac5
- Added %age context on Gene based slices, tweaks to stable id fetches, and white space removal · 893438b2
  Web Admin authored 21 years ago
  
  893438b2
Nov 28, 2003
- small update in doc and regexps · 0364683f
  Abel Ureta-Vidal authored 21 years ago
  
  0364683f
- Modified get_repeatmasked_seq and _mask_features with an added optional... · 5c0a5204
  Abel Ureta-Vidal authored 21 years ago
```
Modified get_repeatmasked_seq and _mask_features with an added optional parameter that allow selecting teh way of masking, soft or hard, depending on the repeat class or name
```
  5c0a5204
- new module for facilitating script authors to fetch db-related arguments · 706ccdb6
  juguang authored 21 years ago
  
  706ccdb6
Nov 26, 2003
- Activated table dropping in clean_blast_database · 2e324587
  Web Admin authored 21 years ago
  
  2e324587
Nov 25, 2003
- added ternary to remove useless warning under -w switch · c23c8819
  Web Admin authored 21 years ago
  
  c23c8819
Nov 21, 2003
- Added status col to blast_ticket · 1393012b
  Will Spooner authored 21 years ago
  
  1393012b
Nov 19, 2003
- undo fix to already fixed method · 6a0fe81f
  Graham McVicker authored 21 years ago
  
  6a0fe81f
- fix to five_prime_utr and three_prime_utr methods for when no UTR is defined · 4caed4dc
  Graham McVicker authored 21 years ago
  
  4caed4dc
- prevent 'undefined' warning · 0e61ba71
  Simon Potter authored 21 years ago
  
  0e61ba71
- string concat bug (fix by scp copied from branch-ensembl-17) · 683dc423
  Graham McVicker authored 21 years ago
  
  683dc423
Nov 06, 2003

Removed bugs: · 225b7914

Andreas Kusalananda Kähäri authored 21 years ago

    Didn't create destination directory.
    Tried to fetch data from "pub/NEW".

225b7914

Nov 05, 2003
- add fetch_by_transcript_id · 87179b21
  juguang authored 21 years ago
  
  87179b21
Nov 04, 2003
- now returns true · 1e86adfd
  Web Admin authored 21 years ago
  
  1e86adfd
Nov 03, 2003
- remove warn · b5094f90
  Web Admin authored 21 years ago
  
  b5094f90
Oct 30, 2003
- is_known uses eq now instead of /KNOWN/ so it wiill ignore knownxref tags · 728d5fb9
  Arne Stabenau authored 21 years ago
  
  728d5fb9
- fixed CORE::length warnings in Transcript · 33523202
  James Gilbert authored 21 years ago
```
added TYPE parameter to DBAdaptor constructor
```
  33523202
Oct 24, 2003
- Converted columns of the main table from array entries into hash · 2f0a52de
  Andreas Kusalananda Kähäri authored 21 years ago
```
entries.  Makes it easier to customize, and to remember.
```
  2f0a52de
- Hopefully fixed a bug that didn't show up on my system. · e74d5a2f
  Andreas Kusalananda Kähäri authored 21 years ago
  
  e74d5a2f
Oct 23, 2003
- Sorting on score is a special case. In this case we must first · 8b036e79
  Andreas Kusalananda Kähäri authored 21 years ago
```
sort on the first part of the "description" field.
```
  8b036e79
- Bug fix for exon density; now writes exon density to file · 0dd714f1
  Glenn Proctor authored 21 years ago
  
  0dd714f1
- Added calls for assembly name/version to slice via DBAdaptor · 132666f5
  Web Admin authored 21 years ago
  
  132666f5
- Added more stats · 7beea4ad
  Glenn Proctor authored 21 years ago
  
  7beea4ad
- Bug squished. · 0c813778
  Andreas Kusalananda Kähäri authored 21 years ago
  
  0c813778
- new sanger Hver1_3_1 mappings · 18749a0f
  Damian Smedley authored 21 years ago
  
  18749a0f
Oct 22, 2003
- bugfixes for ExternalFeatureAdaptor,support for assembly version/name in meta... · 70a0643d
  Web Admin authored 21 years ago
```
bugfixes for ExternalFeatureAdaptor,support for assembly version/name in meta table, support for Glovar and removed some mysql-only DB dependencies
```
  70a0643d
- Removed some debugging output. · 5bc4fc61
  Andreas Kusalananda Kähäri authored 21 years ago
  
  5bc4fc61
- Rewrite with bugfixes. · ff057e9a
  Andreas Kusalananda Kähäri authored 21 years ago
  
  ff057e9a
- Created · d146576e
  Glenn Proctor authored 21 years ago
  
  d146576e