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Django package containing chebi models.

FunPDBe Validator client that can parse and validate FunPDBe JSON files

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

SMBGC detection tool

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

A basic Python-based EGA download client

Singularity in HPC

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Project to perform the data indexation process to the ChEBI platform

ChEBI database management

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

A simple API that runs delayed jobs. It allows to submit a job and check it's status. When a job finishes it saves the results in the NFS.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).