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Django package containing chebi models.

Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

FunPDBe Validator client that can parse and validate FunPDBe JSON files

SMBGC detection tool

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

A basic Python-based EGA download client

Singularity in HPC

A simple API that runs delayed jobs. It allows to submit a job and check it's status. When a job finishes it saves the results in the NFS.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

EMBL publications annual report

A Python package to extract, annotate and manipulate catalytic site entities using raw info from the M-CSA API

Workflows as a Service