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This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).
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Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)
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pdbe / PDBeCIF
Apache License 2.0PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data. The documentation can be found at: http://pdbe.gitdocs.ebi.ac.uk/PDBeCIF/
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Ioannis Riziotis / Biopython
BSD 3-Clause "New" or "Revised" LicenseBioPython with some changes I am making in the PDB package to fit best to my projects
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This project defines a delayed job that runs biological sequence searches (BLAST).
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This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.
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This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens
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This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.
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This project defines a delayed job that generates CSV, TSV and SDF Files of subsets of data in ChEMBL.
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pdbe-kb / services / 3d-beacons-registry
Apache License 2.0Updated -
Quick demonstration of server that displays indications sections of DailyMed structured product labels (SPLs, i.e. drug labels). The SPLs are exposed in their own URLs which serve as a static location so that they can be annotated with hypothes.is.
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dynamicTreeCut (from R) implemented in Python. Forked from https://github.com/kylessmith/dynamicTreeCut to fix bugs and maybe add features
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The template matching software Jess, first written by Jonathan Barker
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Project that is able to generate subsets of indexes in ChEMBL. Useful for handling queries that involve many terms.
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petsalakilab / centools
OtherCEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.
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