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FAARC: Fewshots Approach to Article Classification

This repo contains the code to analyse the data for assemblies manuscript

BioBert model trained on EPMC dataset for NER task

This project defines a delayed job that runs biological sequence searches (BLAST).

Contenxtual Annotations Pipeline with Tagging and Linking (CAPITAL)

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

ChEBI automatic cross references for external sources

ChEBI database management

ChEBI data in different formats: TSV, SDF and SQL Dumps

Project to perform the data indexation process to the ChEBI platform

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Django package containing chebi models.

RDKit and OSRA in the Bottle on Tornado

Tools to load data into the ChEMBl Elastic Search cluster, and replicate it.

ChEMBL Web Services in Python 3