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BioBert model trained on EPMC dataset for NER task

Django package containing chebi models.

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

FunPDBe Validator client that can parse and validate FunPDBe JSON files

SMBGC detection tool

Singularity in HPC

A basic Python-based EGA download client

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Quick demonstration of server that displays indications sections of DailyMed structured product labels (SPLs, i.e. drug labels). The SPLs are exposed in their own URLs which serve as a static location so that they can be annotated with hypothes.is.

PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data. The documentation can be found at: http://pdbe.gitdocs.ebi.ac.uk/PDBeCIF/

This project contains an API that serves as a proxy of elasticsearch for the interface. It handles the caching, usage statistics, contexts and standardisation of properties.

Image to update FPSim2 fingerprints table. It can be used in all our services.

BGC detection tool

TSI Cloud Consultants Documentation https://tsi-ccdoc.readthedocs.io/en/master/