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Europe PMC Annotated Fulltext Corpus of 300 articles for core entity types (Gene/Proteins, Diseases and Species)

SMBGC detection tool

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

A basic Python-based EGA download client

Singularity in HPC

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

A nextflow pipeline for polygenic score calculation

A simple API that runs delayed jobs. It allows to submit a job and check it's status. When a job finishes it saves the results in the NFS.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

A Python package to extract, annotate and manipulate catalytic site entities using raw info from the M-CSA API

Forked from https://github.com/jerrylin0809/pac-bayesian-dendrogram-cut.git

Workflows as a Service

Joint workshop on programmatic access and web components offered by PDBe and UniProt