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BioBert model trained on EPMC dataset for NER task

This is the python implementation of CEN-tools, an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

SMBGC detection tool

Singularity in HPC

A basic Python-based EGA download client

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

Quick demonstration of server that displays indications sections of DailyMed structured product labels (SPLs, i.e. drug labels). The SPLs are exposed in their own URLs which serve as a static location so that they can be annotated with hypothes.is.

Image to update FPSim2 fingerprints table. It can be used in all our services.

BGC detection tool

TSI Cloud Consultants Documentation https://tsi-ccdoc.readthedocs.io/en/master/

FAARC: Fewshots Approach to Article Classification

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

Europe PMC Machine Learning Filter for Removing False Positives from Dictionary Annotations