Explore projects

In this repository, I am going to share all the data and codes required to reproduce my library gene selection steps for the 2D CRISPR Project (Colorectal and Breast cancer cell lines)

Extract groups of sequences sharing the same barcode using a graph approach

CEN-tools is an integrative tool that identifies the underlying context that is associated with the essentiality of a gene from large-scale genome-scale CRISPR screens.

User-friendly nextflow workflow and web server to derive phenotype-specific cell signalling networks by integrating paired phenotype and transcriptomic data.

DIA-reanalysis pipeline code and results

EnsembleFlex - Flexibility Analysis of Structure Ensembles

Automated container for Analysis of High Throughput Sequencing Data

This package complements the performance evaluation for the manuscript entitled "Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs"

IMPC statistical pipeline docker image

Docker files for Metagenomics Bioinformatics MGnify session.

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.